| Field | Description |
|---|---|
| SampleID | Name of the sample |
| TrimReads | Total number of reads after quality filtering |
| MeanReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| LargestContig | Length (bp) of the largest contig in the genome |
| N50 | Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly |
| GC-Content | GC content (%) of the draft genome |
| Depth | Number of times each nucleotide position in the draft genome has a read that aligns to that position |
| SampleID | TrimReads | MeanReadLen | Contigs | GenomeLength | LargestContig | N50 | GC-Content | Depth |
|---|---|---|---|---|---|---|---|---|
| ID001 | 607731 | 132 | 166 | 4903199 | 254692 | 68520 | 54.84 | 16X |
| ID013II | 424032 | 129 | 100 | 4973917 | 468926 | 99959 | 54.52 | 10X |
| ID038 | 509079 | 131 | 113 | 5194279 | 403028 | 96579 | 54.73 | 12X |
| ID086II | 519312 | 131 | 116 | 4697144 | 415883 | 100435 | 55.21 | 14X |
| ID086 | 444451 | 133 | 145 | 5201943 | 637862 | 260905 | 50.73 | 11X |
| ID267 | 484727 | 129 | 518 | 9382958 | 150287 | 36388 | 45.63 | 6X |
| ORTHO006E | 2677 | 139 | 318 | 203965 | 2463 | 627 | 54.29 | 1X |
| ORTHO008E | 407535 | 133 | 464 | 9656529 | 365862 | 43706 | 53.04 | 5X |
| ORTHO014EII | 447820 | 134 | 114 | 4688847 | 410319 | 115038 | 55.20 | 12X |
| ORTHO025EII | 387292 | 135 | 1206 | 4688468 | 68760 | 7740 | 32.83 | 11X |
| ORTHO025E | 399676 | 133 | 187 | 5401176 | 306135 | 87724 | 54.99 | 9X |
Average number of reads per sample = 421303
Average read length per sample = 133 bp
Average number of contigs per sample = 313
Average genome length per sample = 5362948 bp
Average largest contig length per sample = 316747 bp
Average N50 per sample = 83420 bp
Average GC content per sample = 51.455%
Average sequencing depth = 9.727X
| Field | Description |
|---|---|
| GenomePosition | Position in the genome where SNP is found |
| Type | Nature of the SNP identified (Only ‘True’ SNPs are shown by default) |
| ReferenceAllele | Allele found in the reference genome |
| AlternateAllele | Allele found in the genome of interest forming the SNP |
| Consequence | Amino acid alterations caused by the SNP |
| AffectedGene | The tartget gene affected by the SNP |
| Product | The outcome from the presence of the SNP |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 29509 | snp | G | T | missense_variant c.846G>T p.Leu282Phe | multidrug resistance protein MdtH | |
| 303195 | snp | G | A | missense_variant c.1496C>T p.Ala499Val | EmrB/QacA subfamily drug resistance transporter | |
| 303342 | snp | A | T | missense_variant c.1349T>A p.Leu450Gln | EmrB/QacA subfamily drug resistance transporter | |
| 303916 | snp | T | C | missense_variant c.775A>G p.Met259Val | EmrB/QacA subfamily drug resistance transporter | |
| 303946 | snp | C | T | missense_variant c.745G>A p.Val249Ile | EmrB/QacA subfamily drug resistance transporter | |
| 303995 | snp | A | T | missense_variant c.696T>A p.Asp232Glu | EmrB/QacA subfamily drug resistance transporter | |
| 304411 | snp | T | C | missense_variant c.280A>G p.Ile94Val | EmrB/QacA subfamily drug resistance transporter | |
| 305128 | snp | A | C | missense_variant c.654T>G p.Asp218Glu | Putative multidrug resistance protein K | |
| 790153 | snp | G | A | missense_variant c.323C>T p.Thr108Ile | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 790302 | snp | G | C | missense_variant c.174C>G p.Asp58Glu | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 790367 | snp | C | T | missense_variant c.109G>A p.Val37Met | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 1172546 | snp | C | A | missense_variant c.237C>A p.Asp79Glu | Organic hydroperoxide resistance protein | |
| 1333301 | snp | A | C | missense_variant c.157A>C p.Met53Leu | bioflm peroxide resistance protein BsmA | |
| 1333333 | snp | C | G | missense_variant c.189C>G p.Asp63Glu | bioflm peroxide resistance protein BsmA | |
| 1750949 | snp | A | G | missense_variant c.496A>G p.Thr166Ala | emrD | multidrug resistance protein D |
| 1751250 | snp | C | A | missense_variant c.797C>A p.Pro266Gln | emrD | multidrug resistance protein D |
| 1751337 | snp | A | G | missense_variant c.884A>G p.Asp295Gly | emrD | multidrug resistance protein D |
| 1912419 | snp | A | C | missense_variant c.48A>C p.Glu16Asp | 6-N-hydroxylaminopurine resistance protein | |
| 1912579 | snp | G | A | missense_variant c.208G>A p.Ala70Thr | 6-N-hydroxylaminopurine resistance protein | |
| 1912593 | snp | A | C | missense_variant c.222A>C p.Glu74Asp | 6-N-hydroxylaminopurine resistance protein | |
| 1912784 | snp | A | G | missense_variant c.413A>G p.Asn138Ser | 6-N-hydroxylaminopurine resistance protein | |
| 2110164 | snp | T | C | missense_variant c.620A>G p.Glu207Gly | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110400 | snp | A | C | missense_variant c.384T>G p.Phe128Leu | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2134402 | snp | C | A | missense_variant c.556C>A p.His186Asn | tellurium resistance protein TerC | |
| 2134459 | snp | A | C | missense_variant c.613A>C p.Lys205Gln | tellurium resistance protein TerC | |
| 2713270 | snp | A | C | missense_variant c.491A>C p.Lys164Thr | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2955613 | snp | T | C | missense_variant c.1525A>G p.Ser509Gly | EmrB/QacA family drug resistance transporter | |
| 2955633 | snp | T | C | missense_variant c.1505A>G p.Lys502Arg | EmrB/QacA family drug resistance transporter | |
| 2955720 | snp | T | C | missense_variant c.1418A>G p.Asn473Ser | EmrB/QacA family drug resistance transporter | |
| 2955739 | snp | G | T | missense_variant c.1399C>A p.Leu467Ile | EmrB/QacA family drug resistance transporter | |
| 2955813 | snp | A | T | missense_variant c.1325T>A p.Phe442Tyr | EmrB/QacA family drug resistance transporter | |
| 2956717 | snp | T | C | missense_variant c.421A>G p.Ile141Val | EmrB/QacA family drug resistance transporter | |
| 2956743 | snp | T | C | missense_variant c.395A>G p.Asn132Ser | EmrB/QacA family drug resistance transporter | |
| 3506189 | snp | C | T | missense_variant c.11C>T p.Ser4Phe | multidrug resistance outer membrane protein MdtQ | |
| 3506195 | snp | C | T | missense_variant c.17C>T p.Thr6Ile | multidrug resistance outer membrane protein MdtQ | |
| 3506251 | snp | G | T | missense_variant c.73G>T p.Ala25Ser | multidrug resistance outer membrane protein MdtQ | |
| 3506330 | snp | G | A | missense_variant c.152G>A p.Ser51Asn | multidrug resistance outer membrane protein MdtQ | |
| 3507105 | snp | T | G | missense_variant c.927T>G p.Asp309Glu | multidrug resistance outer membrane protein MdtQ | |
| 4211972 | snp | G | A | missense_variant c.235G>A p.Val79Met | methyl viologen resistance protein SmvA | |
| 4212407 | snp | A | C | missense_variant c.670A>C p.Met224Leu | methyl viologen resistance protein SmvA | |
| 4212768 | snp | C | T | missense_variant c.1031C>T p.Thr344Met | methyl viologen resistance protein SmvA | |
| 4308046 | snp | G | T | missense_variant c.496C>A p.Leu166Ile | multiple drug resistance protein MarC | |
| 4308085 | snp | G | C | missense_variant c.457C>G p.His153Asp | multiple drug resistance protein MarC | |
| 4308254 | snp | G | C | missense_variant c.288C>G p.His96Gln | multiple drug resistance protein MarC | |
| 4309671 | snp | T | G | missense_variant c.7T>G p.Phe3Val | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309692 | snp | A | G | missense_variant c.28A>G p.Thr10Ala | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309707 | snp | G | T | missense_variant c.43G>T p.Val15Phe | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309713 | snp | G | A | missense_variant c.49G>A p.Gly17Ser | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309776 | snp | A | T | missense_variant c.112A>T p.Met38Leu | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4332012 | snp | G | C | missense_variant c.455C>G p.Thr152Ser | tellurite resistance protein TehB | |
| 4332054 | snp | T | G | missense_variant c.413A>C p.Glu138Ala | tellurite resistance protein TehB | |
| 4793901 | snp | C | A | missense_variant c.102G>T p.Gln34His | multiple stress resistance protein BhsA |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 29714 | snp | A | G | missense_variant c.1051A>G p.Thr351Ala | multidrug resistance protein MdtH | |
| 29786 | snp | A | G | missense_variant c.1123A>G p.Met375Val | multidrug resistance protein MdtH | |
| 303195 | snp | G | A | missense_variant c.1496C>T p.Ala499Val | EmrB/QacA subfamily drug resistance transporter | |
| 303342 | snp | A | T | missense_variant c.1349T>A p.Leu450Gln | EmrB/QacA subfamily drug resistance transporter | |
| 304411 | snp | T | C | missense_variant c.280A>G p.Ile94Val | EmrB/QacA subfamily drug resistance transporter | |
| 304546 | snp | C | A | missense_variant c.145G>T p.Ala49Ser | EmrB/QacA subfamily drug resistance transporter | |
| 304869 | snp | T | C | missense_variant c.913A>G p.Ile305Val | Putative multidrug resistance protein K | |
| 305427 | snp | T | G | missense_variant c.355A>C p.Lys119Gln | Putative multidrug resistance protein K | |
| 790406 | snp | A | G | missense_variant c.70T>C p.Ser24Pro | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 1172546 | snp | C | G | missense_variant c.237C>G p.Asp79Glu | Organic hydroperoxide resistance protein | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1750694 | snp | A | T | missense_variant c.241A>T p.Ser81Cys | emrD | multidrug resistance protein D |
| 1751250 | snp | C | A | missense_variant c.797C>A p.Pro266Gln | emrD | multidrug resistance protein D |
| 1912419 | snp | A | C | missense_variant c.48A>C p.Glu16Asp | 6-N-hydroxylaminopurine resistance protein | |
| 1912479 | snp | T | G | missense_variant c.108T>G p.Asp36Glu | 6-N-hydroxylaminopurine resistance protein | |
| 1912533 | snp | T | A | missense_variant c.162T>A p.Asp54Glu | 6-N-hydroxylaminopurine resistance protein | |
| 1912660 | snp | A | G | missense_variant c.289A>G p.Asn97Asp | 6-N-hydroxylaminopurine resistance protein | |
| 1912682 | snp | A | T | missense_variant c.311A>T p.Tyr104Phe | 6-N-hydroxylaminopurine resistance protein | |
| 1912820 | snp | A | T | missense_variant c.449A>T p.Gln150Leu | 6-N-hydroxylaminopurine resistance protein | |
| 2134459 | snp | A | C | missense_variant c.613A>C p.Lys205Gln | tellurium resistance protein TerC | |
| 2955739 | snp | G | T | missense_variant c.1399C>A p.Leu467Ile | EmrB/QacA family drug resistance transporter | |
| 2955778 | snp | C | G | missense_variant c.1360G>C p.Glu454Gln | EmrB/QacA family drug resistance transporter | |
| 2955813 | snp | A | T | missense_variant c.1325T>A p.Phe442Tyr | EmrB/QacA family drug resistance transporter | |
| 2956522 | snp | C | T | missense_variant c.616G>A p.Gly206Ser | EmrB/QacA family drug resistance transporter | |
| 2956717 | snp | T | C | missense_variant c.421A>G p.Ile141Val | EmrB/QacA family drug resistance transporter | |
| 3506802 | snp | A | C | missense_variant c.624A>C p.Glu208Asp | multidrug resistance outer membrane protein MdtQ | |
| 3507065 | snp | A | C | missense_variant c.887A>C p.Glu296Ala | multidrug resistance outer membrane protein MdtQ | |
| 3507325 | snp | G | A | missense_variant c.1147G>A p.Asp383Asn | multidrug resistance outer membrane protein MdtQ | |
| 3507368 | snp | C | T | missense_variant c.1190C>T p.Thr397Met | multidrug resistance outer membrane protein MdtQ | |
| 4212440 | snp | A | T | missense_variant c.703A>T p.Met235Leu | methyl viologen resistance protein SmvA | |
| 4308254 | snp | G | T | missense_variant c.288C>A p.His96Gln | multiple drug resistance protein MarC | |
| 4308416 | snp | C | A | missense_variant c.126G>T p.Gln42His | multiple drug resistance protein MarC | |
| 4309692 | snp | A | G | missense_variant c.28A>G p.Thr10Ala | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309713 | snp | G | A | missense_variant c.49G>A p.Gly17Ser | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309720 | snp | G | C | missense_variant c.56G>C p.Ser19Thr | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309734 | snp | A | C | missense_variant c.70A>C p.Thr24Pro | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309762 | snp | G | A | missense_variant c.98G>A p.Arg33His | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309776 | snp | A | T | missense_variant c.112A>T p.Met38Leu | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4331998 | snp | T | G | missense_variant c.469A>C p.Asn157His | tellurite resistance protein TehB | |
| 4332137 | snp | A | T | missense_variant c.330T>A p.Asn110Lys | tellurite resistance protein TehB | |
| 4332198 | snp | G | C | missense_variant c.269C>G p.Thr90Ser | tellurite resistance protein TehB | |
| 4332204 | snp | T | C | missense_variant c.263A>G p.Asn88Ser | tellurite resistance protein TehB | |
| 4332463 | snp | T | C | missense_variant c.4A>G p.Thr2Ala | tellurite resistance protein TehB | |
| 4332471 | snp | T | G | missense_variant c.991A>C p.Lys331Gln | tellurite resistance protein TehA | |
| 4332491 | snp | A | C | missense_variant c.971T>G p.Leu324Arg | tellurite resistance protein TehA | |
| 4332504 | snp | C | T | missense_variant c.958G>A p.Ala320Thr | tellurite resistance protein TehA | |
| 4332526 | snp | C | T | missense_variant c.936G>A p.Met312Ile | tellurite resistance protein TehA | |
| 4332628 | snp | C | G | missense_variant c.834G>C p.Gln278His | tellurite resistance protein TehA | |
| 4332723 | snp | T | A | missense_variant c.739A>T p.Met247Leu | tellurite resistance protein TehA | |
| 4562255 | snp | T | G | missense_variant c.304T>G p.Ser102Ala | fusaric acid resistance protein | |
| 4793901 | snp | C | A | missense_variant c.102G>T p.Gln34His | multiple stress resistance protein BhsA |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 29423 | snp | T | A | missense_variant c.760T>A p.Cys254Ser | multidrug resistance protein MdtH | |
| 38920 | snp | A | C | missense_variant c.1220A>C p.Gln407Pro | multidrug resistance protein MdtG | |
| 790177 | snp | C | T | missense_variant c.299G>A p.Gly100Asp | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 1172663 | snp | G | T | missense_variant c.354G>T p.Glu118Asp | Organic hydroperoxide resistance protein | |
| 1333165 | snp | T | A | missense_variant c.21T>A p.Phe7Leu | bioflm peroxide resistance protein BsmA | |
| 1333235 | snp | A | G | missense_variant c.91A>G p.Asn31Asp | bioflm peroxide resistance protein BsmA | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1717414 | snp | C | T | missense_variant c.829G>A p.Val277Ile | EmrB/QacA family drug resistance transporter | |
| 1727078 | snp | A | T | missense_variant c.1132A>T p.Ile378Phe | Bcr/CflA family drug resistance efflux transporter | |
| 1727098 | snp | A | T | missense_variant c.1152A>T p.Lys384Asn | Bcr/CflA family drug resistance efflux transporter | |
| 1750949 | snp | A | G | missense_variant c.496A>G p.Thr166Ala | emrD | multidrug resistance protein D |
| 1912597 | snp | G | A | missense_variant c.226G>A p.Ala76Thr | 6-N-hydroxylaminopurine resistance protein | |
| 2110117 | snp | C | T | missense_variant c.667G>A p.Val223Ile | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110164 | snp | T | C | missense_variant c.620A>G p.Glu207Gly | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110381 | snp | T | C | missense_variant c.403A>G p.Ile135Val | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110402 | snp | A | G | missense_variant c.382T>C p.Phe128Leu | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110581 | snp | G | C | missense_variant c.203C>G p.Thr68Ser | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2124246 | snp | G | T | missense_variant c.46G>T p.Gly16Cys | copper resistance protein B | |
| 2712819 | snp | G | C | missense_variant c.40G>C p.Glu14Gln | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2751139 | snp | G | A | missense_variant c.313C>T p.Pro105Ser | copper resistance protein | |
| 2751219 | snp | A | C | missense_variant c.233T>G p.Ile78Ser | copper resistance protein | |
| 2751301 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | copper resistance protein | |
| 2751337 | snp | C | T | missense_variant c.115G>A p.Ala39Thr | copper resistance protein | |
| 2878355 | snp | T | C | missense_variant c.23A>G p.Asp8Gly | quinolone resistance protein | |
| 3472268 | snp | G | T | missense_variant c.1049C>A p.Ala350Asp | phage resistance protein | |
| 3472535 | snp | C | T | missense_variant c.782G>A p.Arg261His | phage resistance protein | |
| 3472612 | snp | A | T | missense_variant c.705T>A p.Asp235Glu | phage resistance protein | |
| 3472710 | snp | G | A | missense_variant c.607C>T p.Pro203Ser | phage resistance protein | |
| 3472779 | snp | C | T | missense_variant c.538G>A p.Asp180Asn | phage resistance protein | |
| 3506390 | snp | A | C | missense_variant c.212A>C p.Glu71Ala | multidrug resistance outer membrane protein MdtQ | |
| 3507366 | snp | A | T | missense_variant c.1188A>T p.Glu396Asp | multidrug resistance outer membrane protein MdtQ | |
| 3507514 | snp | A | G | missense_variant c.1336A>G p.Thr446Ala | multidrug resistance outer membrane protein MdtQ | |
| 4212221 | snp | T | G | missense_variant c.484T>G p.Ser162Ala | methyl viologen resistance protein SmvA | |
| 4213168 | snp | G | T | missense_variant c.1431G>T p.Met477Ile | methyl viologen resistance protein SmvA | |
| 4333297 | snp | G | C | missense_variant c.165C>G p.Phe55Leu | tellurite resistance protein TehA | |
| 4563093 | snp | C | T | missense_variant c.1142C>T p.Thr381Ile | fusaric acid resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 38001 | snp | G | A | missense_variant c.301G>A p.Val101Met | multidrug resistance protein MdtG | |
| 38613 | snp | T | A | missense_variant c.913T>A p.Leu305Met | multidrug resistance protein MdtG | |
| 305427 | snp | T | G | missense_variant c.355A>C p.Lys119Gln | Putative multidrug resistance protein K | |
| 790352 | snp | T | C | missense_variant c.124A>G p.Ile42Val | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 790359 | snp | A | C | missense_variant c.117T>G p.Asp39Glu | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 1333165 | snp | T | A | missense_variant c.21T>A p.Phe7Leu | bioflm peroxide resistance protein BsmA | |
| 1333196 | snp | A | G | missense_variant c.52A>G p.Ile18Val | bioflm peroxide resistance protein BsmA | |
| 1333235 | snp | A | G | missense_variant c.91A>G p.Asn31Asp | bioflm peroxide resistance protein BsmA | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1716676 | snp | A | T | missense_variant c.1567T>A p.Ser523Thr | EmrB/QacA family drug resistance transporter | |
| 1717414 | snp | C | T | missense_variant c.829G>A p.Val277Ile | EmrB/QacA family drug resistance transporter | |
| 1717441 | snp | G | T | missense_variant c.802C>A p.Leu268Met | EmrB/QacA family drug resistance transporter | |
| 1725956 | snp | C | G | missense_variant c.10C>G p.Leu4Val | Bcr/CflA family drug resistance efflux transporter | |
| 1726520 | snp | G | A | missense_variant c.574G>A p.Gly192Arg | Bcr/CflA family drug resistance efflux transporter | |
| 1726853 | snp | A | G | missense_variant c.907A>G p.Ile303Val | Bcr/CflA family drug resistance efflux transporter | |
| 1726931 | snp | G | A | missense_variant c.985G>A p.Ala329Thr | Bcr/CflA family drug resistance efflux transporter | |
| 1727098 | snp | A | T | missense_variant c.1152A>T p.Lys384Asn | Bcr/CflA family drug resistance efflux transporter | |
| 1750715 | snp | G | A | missense_variant c.262G>A p.Val88Met | emrD | multidrug resistance protein D |
| 1750870 | snp | G | C | missense_variant c.417G>C p.Met139Ile | emrD | multidrug resistance protein D |
| 1750992 | snp | C | G | missense_variant c.539C>G p.Ala180Gly | emrD | multidrug resistance protein D |
| 1912415 | snp | A | T | missense_variant c.44A>T p.Tyr15Phe | 6-N-hydroxylaminopurine resistance protein | |
| 1912579 | snp | G | A | missense_variant c.208G>A p.Ala70Thr | 6-N-hydroxylaminopurine resistance protein | |
| 1912999 | snp | T | A | missense_variant c.628T>A p.Leu210Ile | 6-N-hydroxylaminopurine resistance protein | |
| 2110117 | snp | C | T | missense_variant c.667G>A p.Val223Ile | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110164 | snp | T | C | missense_variant c.620A>G p.Glu207Gly | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110381 | snp | T | C | missense_variant c.403A>G p.Ile135Val | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110402 | snp | A | G | missense_variant c.382T>C p.Phe128Leu | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2110581 | snp | G | C | missense_variant c.203C>G p.Thr68Ser | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2124246 | snp | G | T | missense_variant c.46G>T p.Gly16Cys | copper resistance protein B | |
| 2877327 | snp | A | T | missense_variant c.1051T>A p.Ser351Thr | quinolone resistance protein | |
| 2877477 | snp | G | A | missense_variant c.901C>T p.His301Tyr | quinolone resistance protein | |
| 2877627 | snp | T | C | missense_variant c.751A>G p.Ile251Val | quinolone resistance protein | |
| 2878142 | snp | T | A | missense_variant c.236A>T p.Tyr79Phe | quinolone resistance protein | |
| 2878355 | snp | T | C | missense_variant c.23A>G p.Asp8Gly | quinolone resistance protein | |
| 3471912 | snp | A | T | missense_variant c.1405T>A p.Leu469Ile | phage resistance protein | |
| 3472445 | snp | T | C | missense_variant c.872A>G p.Lys291Arg | phage resistance protein | |
| 3472921 | snp | C | G | missense_variant c.396G>C p.Met132Ile | phage resistance protein | |
| 3473003 | snp | T | A | missense_variant c.314A>T p.Tyr105Phe | phage resistance protein | |
| 3473274 | snp | G | T | missense_variant c.43C>A p.Leu15Ile | phage resistance protein | |
| 3473311 | snp | A | T | missense_variant c.6T>A p.Phe2Leu | phage resistance protein | |
| 3506290 | snp | G | A | missense_variant c.112G>A p.Ala38Thr | multidrug resistance outer membrane protein MdtQ | |
| 3506356 | snp | C | T | missense_variant c.178C>T p.Pro60Ser | multidrug resistance outer membrane protein MdtQ | |
| 3506390 | snp | A | C | missense_variant c.212A>C p.Glu71Ala | multidrug resistance outer membrane protein MdtQ | |
| 3506668 | snp | C | A | missense_variant c.490C>A p.Gln164Lys | multidrug resistance outer membrane protein MdtQ | |
| 3506930 | snp | T | C | missense_variant c.752T>C p.Val251Ala | multidrug resistance outer membrane protein MdtQ | |
| 3506959 | snp | C | A | missense_variant c.781C>A p.His261Asn | multidrug resistance outer membrane protein MdtQ | |
| 3507514 | snp | A | G | missense_variant c.1336A>G p.Thr446Ala | multidrug resistance outer membrane protein MdtQ | |
| 3813589 | snp | T | C | missense_variant c.71T>C p.Val24Ala | copper resistance protein CopC | |
| 3813807 | snp | T | A | missense_variant c.289T>A p.Ser97Thr | copper resistance protein CopC | |
| 4211829 | snp | C | A | missense_variant c.92C>A p.Thr31Lys | methyl viologen resistance protein SmvA | |
| 4212256 | snp | C | G | missense_variant c.519C>G p.Ile173Met | methyl viologen resistance protein SmvA | |
| 4213105 | snp | G | A | missense_variant c.1368G>A p.Met456Ile | methyl viologen resistance protein SmvA | |
| 4308097 | snp | T | A | missense_variant c.445A>T p.Thr149Ser | multiple drug resistance protein MarC | |
| 4309741 | snp | A | G | missense_variant c.77A>G p.Asn26Ser | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4332013 | snp | T | G | missense_variant c.454A>C p.Thr152Pro | tellurite resistance protein TehB | |
| 4332229 | snp | C | G | missense_variant c.238G>C p.Glu80Gln | tellurite resistance protein TehB | |
| 4333146 | snp | G | C | missense_variant c.316C>G p.Leu106Val | tellurite resistance protein TehA | |
| 4562810 | snp | C | T | missense_variant c.859C>T p.Pro287Ser | fusaric acid resistance protein | |
| 4562861 | snp | A | G | missense_variant c.910A>G p.Thr304Ala | fusaric acid resistance protein | |
| 4563854 | snp | G | A | missense_variant c.1903G>A p.Ala635Thr | fusaric acid resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 1751337 | snp | A | G | missense_variant c.884A>G p.Asp295Gly | emrD | multidrug resistance protein D |
| 2110350 | snp | A | G | missense_variant c.434T>C p.Val145Ala | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2956830 | snp | C | T | missense_variant c.308G>A p.Ser103Asn | EmrB/QacA family drug resistance transporter |
## Error in read.table("ID267_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 1751337 | snp | A | G | missense_variant c.884A>G p.Asp295Gly | emrD | multidrug resistance protein D |
| 2110350 | snp | A | G | missense_variant c.434T>C p.Val145Ala | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2956830 | snp | C | T | missense_variant c.308G>A p.Ser103Asn | EmrB/QacA family drug resistance transporter |
## Error in read.table("ORTHO006E_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 1751337 | snp | A | G | missense_variant c.884A>G p.Asp295Gly | emrD | multidrug resistance protein D |
| 2110350 | snp | A | G | missense_variant c.434T>C p.Val145Ala | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2956830 | snp | C | T | missense_variant c.308G>A p.Ser103Asn | EmrB/QacA family drug resistance transporter |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 38920 | snp | A | C | missense_variant c.1220A>C p.Gln407Pro | multidrug resistance protein MdtG | |
| 304886 | snp | A | G | missense_variant c.896T>C p.Met299Thr | Putative multidrug resistance protein K | |
| 1172663 | snp | G | T | missense_variant c.354G>T p.Glu118Asp | Organic hydroperoxide resistance protein | |
| 1333165 | snp | T | A | missense_variant c.21T>A p.Phe7Leu | bioflm peroxide resistance protein BsmA | |
| 1333235 | snp | A | G | missense_variant c.91A>G p.Asn31Asp | bioflm peroxide resistance protein BsmA | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1717414 | snp | C | T | missense_variant c.829G>A p.Val277Ile | EmrB/QacA family drug resistance transporter | |
| 1726853 | snp | A | G | missense_variant c.907A>G p.Ile303Val | Bcr/CflA family drug resistance efflux transporter | |
| 1726898 | snp | A | C | missense_variant c.952A>C p.Ile318Leu | Bcr/CflA family drug resistance efflux transporter | |
| 1726931 | snp | G | A | missense_variant c.985G>A p.Ala329Thr | Bcr/CflA family drug resistance efflux transporter | |
| 1726938 | snp | A | T | missense_variant c.992A>T p.Glu331Val | Bcr/CflA family drug resistance efflux transporter | |
| 1727098 | snp | A | T | missense_variant c.1152A>T p.Lys384Asn | Bcr/CflA family drug resistance efflux transporter | |
| 1750949 | snp | A | G | missense_variant c.496A>G p.Thr166Ala | emrD | multidrug resistance protein D |
| 2878142 | snp | T | A | missense_variant c.236A>T p.Tyr79Phe | quinolone resistance protein | |
| 2878355 | snp | T | C | missense_variant c.23A>G p.Asp8Gly | quinolone resistance protein | |
| 3472896 | snp | G | T | missense_variant c.421C>A p.Leu141Met | phage resistance protein | |
| 3473172 | snp | C | T | missense_variant c.145G>A p.Asp49Asn | phage resistance protein | |
| 3506278 | snp | G | A | missense_variant c.100G>A p.Ala34Thr | multidrug resistance outer membrane protein MdtQ | |
| 3506390 | snp | A | C | missense_variant c.212A>C p.Glu71Ala | multidrug resistance outer membrane protein MdtQ | |
| 3507352 | snp | G | T | missense_variant c.1174G>T p.Ala392Ser | multidrug resistance outer membrane protein MdtQ | |
| 3507522 | snp | G | C | missense_variant c.1344G>C p.Leu448Phe | multidrug resistance outer membrane protein MdtQ | |
| 4212221 | snp | T | G | missense_variant c.484T>G p.Ser162Ala | methyl viologen resistance protein SmvA | |
| 4308097 | snp | T | A | missense_variant c.445A>T p.Thr149Ser | multiple drug resistance protein MarC | |
| 4309873 | snp | A | G | missense_variant c.209A>G p.Asp70Gly | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4332137 | snp | A | T | missense_variant c.330T>A p.Asn110Lys | tellurite resistance protein TehB | |
| 4332229 | snp | C | G | missense_variant c.238G>C p.Glu80Gln | tellurite resistance protein TehB | |
| 4333307 | snp | G | C | missense_variant c.155C>G p.Ala52Gly | tellurite resistance protein TehA | |
| 4563251 | snp | G | A | missense_variant c.1300G>A p.Val434Met | fusaric acid resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 28957 | snp | A | C | missense_variant c.294A>C p.Glu98Asp | multidrug resistance protein MdtH | |
| 37707 | snp | C | T | missense_variant c.7C>T p.Pro3Ser | multidrug resistance protein MdtG | |
| 38108 | snp | G | T | missense_variant c.408G>T p.Gln136His | multidrug resistance protein MdtG | |
| 38583 | snp | G | C | missense_variant c.883G>C p.Val295Leu | multidrug resistance protein MdtG | |
| 38802 | snp | A | G | missense_variant c.1102A>G p.Ile368Val | multidrug resistance protein MdtG | |
| 38917 | snp | G | C | missense_variant c.1217G>C p.Arg406Thr | multidrug resistance protein MdtG | |
| 303906 | snp | C | T | missense_variant c.785G>A p.Arg262Lys | EmrB/QacA subfamily drug resistance transporter | |
| 303924 | snp | T | C | missense_variant c.767A>G p.Tyr256Cys | EmrB/QacA subfamily drug resistance transporter | |
| 304670 | snp | A | T | missense_variant c.21T>A p.Asp7Glu | EmrB/QacA subfamily drug resistance transporter | |
| 305427 | snp | T | G | missense_variant c.355A>C p.Lys119Gln | Putative multidrug resistance protein K | |
| 1172444 | snp | A | C | missense_variant c.135A>C p.Glu45Asp | Organic hydroperoxide resistance protein | |
| 1333165 | snp | T | A | missense_variant c.21T>A p.Phe7Leu | bioflm peroxide resistance protein BsmA | |
| 1333196 | snp | A | G | missense_variant c.52A>G p.Ile18Val | bioflm peroxide resistance protein BsmA | |
| 1333235 | snp | A | G | missense_variant c.91A>G p.Asn31Asp | bioflm peroxide resistance protein BsmA | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1717563 | snp | C | T | missense_variant c.680G>A p.Ser227Asn | EmrB/QacA family drug resistance transporter | |
| 1718220 | snp | G | A | missense_variant c.23C>T p.Ala8Val | EmrB/QacA family drug resistance transporter | |
| 1750745 | snp | G | A | missense_variant c.292G>A p.Val98Ile | emrD | multidrug resistance protein D |
| 1750949 | snp | A | G | missense_variant c.496A>G p.Thr166Ala | emrD | multidrug resistance protein D |
| 1912579 | snp | G | A | missense_variant c.208G>A p.Ala70Thr | 6-N-hydroxylaminopurine resistance protein | |
| 1912849 | snp | C | A | missense_variant c.478C>A p.Leu160Ile | 6-N-hydroxylaminopurine resistance protein | |
| 1912886 | snp | A | T | missense_variant c.515A>T p.Tyr172Phe | 6-N-hydroxylaminopurine resistance protein | |
| 1912934 | snp | A | T | missense_variant c.563A>T p.Tyr188Phe | 6-N-hydroxylaminopurine resistance protein | |
| 1912999 | snp | T | A | missense_variant c.628T>A p.Leu210Ile | 6-N-hydroxylaminopurine resistance protein | |
| 2110350 | snp | A | G | missense_variant c.434T>C p.Val145Ala | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2133974 | snp | T | C | missense_variant c.128T>C p.Val43Ala | tellurium resistance protein TerC | |
| 2134454 | snp | A | T | missense_variant c.608A>T p.Glu203Val | tellurium resistance protein TerC | |
| 2712786 | snp | G | A | missense_variant c.7G>A p.Val3Ile | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2751262 | snp | A | T | missense_variant c.190T>A p.Ser64Thr | copper resistance protein | |
| 2751301 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | copper resistance protein | |
| 2877327 | snp | A | T | missense_variant c.1051T>A p.Ser351Thr | quinolone resistance protein | |
| 2877627 | snp | T | C | missense_variant c.751A>G p.Ile251Val | quinolone resistance protein | |
| 2877844 | snp | C | T | missense_variant c.534G>A p.Met178Ile | quinolone resistance protein | |
| 2878099 | snp | C | T | missense_variant c.279G>A p.Met93Ile | quinolone resistance protein | |
| 2878142 | snp | T | A | missense_variant c.236A>T p.Tyr79Phe | quinolone resistance protein | |
| 2955853 | snp | A | C | missense_variant c.1285T>G p.Ser429Ala | EmrB/QacA family drug resistance transporter | |
| 2956361 | snp | A | T | missense_variant c.777T>A p.Asp259Glu | EmrB/QacA family drug resistance transporter | |
| 3472223 | snp | C | T | missense_variant c.1094G>A p.Ser365Asn | phage resistance protein | |
| 3472445 | snp | T | C | missense_variant c.872A>G p.Lys291Arg | phage resistance protein | |
| 3472599 | snp | G | C | missense_variant c.718C>G p.Leu240Val | phage resistance protein | |
| 3472622 | snp | G | T | missense_variant c.695C>A p.Thr232Lys | phage resistance protein | |
| 3473147 | snp | T | A | missense_variant c.170A>T p.Tyr57Phe | phage resistance protein | |
| 3473197 | snp | G | T | missense_variant c.120C>A p.Asp40Glu | phage resistance protein | |
| 3506330 | snp | G | A | missense_variant c.152G>A p.Ser51Asn | multidrug resistance outer membrane protein MdtQ | |
| 3506390 | snp | A | C | missense_variant c.212A>C p.Glu71Ala | multidrug resistance outer membrane protein MdtQ | |
| 3506469 | snp | G | T | missense_variant c.291G>T p.Glu97Asp | multidrug resistance outer membrane protein MdtQ | |
| 3506668 | snp | C | A | missense_variant c.490C>A p.Gln164Lys | multidrug resistance outer membrane protein MdtQ | |
| 3506930 | snp | T | C | missense_variant c.752T>C p.Val251Ala | multidrug resistance outer membrane protein MdtQ | |
| 3506959 | snp | C | A | missense_variant c.781C>A p.His261Asn | multidrug resistance outer membrane protein MdtQ | |
| 3507514 | snp | A | G | missense_variant c.1336A>G p.Thr446Ala | multidrug resistance outer membrane protein MdtQ | |
| 3507592 | snp | G | A | missense_variant c.1414G>A p.Gly472Ser | multidrug resistance outer membrane protein MdtQ | |
| 3813589 | snp | T | C | missense_variant c.71T>C p.Val24Ala | copper resistance protein CopC | |
| 3813807 | snp | T | A | missense_variant c.289T>A p.Ser97Thr | copper resistance protein CopC | |
| 4212417 | snp | G | C | missense_variant c.680G>C p.Cys227Ser | methyl viologen resistance protein SmvA | |
| 4212746 | snp | G | A | missense_variant c.1009G>A p.Val337Ile | methyl viologen resistance protein SmvA | |
| 4213164 | snp | G | C | missense_variant c.1427G>C p.Gly476Ala | methyl viologen resistance protein SmvA | |
| 4213172 | snp | C | A | missense_variant c.1435C>A p.Leu479Met | methyl viologen resistance protein SmvA | |
| 4213184 | snp | G | A | missense_variant c.1447G>A p.Val483Ile | methyl viologen resistance protein SmvA | |
| 4308408 | snp | A | C | missense_variant c.134T>G p.Met45Arg | multiple drug resistance protein MarC | |
| 4309678 | snp | C | T | missense_variant c.14C>T p.Ala5Val | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309741 | snp | A | G | missense_variant c.77A>G p.Asn26Ser | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4331893 | snp | G | T | missense_variant c.574C>A p.Leu192Ile | tellurite resistance protein TehB | |
| 4331998 | snp | T | G | missense_variant c.469A>C p.Asn157His | tellurite resistance protein TehB | |
| 4332137 | snp | A | T | missense_variant c.330T>A p.Asn110Lys | tellurite resistance protein TehB | |
| 4332229 | snp | C | G | missense_variant c.238G>C p.Glu80Gln | tellurite resistance protein TehB | |
| 4332397 | snp | T | A | missense_variant c.70A>T p.Ser24Cys | tellurite resistance protein TehB | |
| 4332692 | snp | G | A | missense_variant c.770C>T p.Ala257Val | tellurite resistance protein TehA | |
| 4562567 | snp | G | A | missense_variant c.616G>A p.Asp206Asn | fusaric acid resistance protein | |
| 4563106 | snp | T | A | missense_variant c.1155T>A p.Asp385Glu | fusaric acid resistance protein |
## Error in read.table("ORTHO025EII_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 28957 | snp | A | C | missense_variant c.294A>C p.Glu98Asp | multidrug resistance protein MdtH | |
| 37707 | snp | C | T | missense_variant c.7C>T p.Pro3Ser | multidrug resistance protein MdtG | |
| 38108 | snp | G | T | missense_variant c.408G>T p.Gln136His | multidrug resistance protein MdtG | |
| 38583 | snp | G | C | missense_variant c.883G>C p.Val295Leu | multidrug resistance protein MdtG | |
| 38802 | snp | A | G | missense_variant c.1102A>G p.Ile368Val | multidrug resistance protein MdtG | |
| 38917 | snp | G | C | missense_variant c.1217G>C p.Arg406Thr | multidrug resistance protein MdtG | |
| 303906 | snp | C | T | missense_variant c.785G>A p.Arg262Lys | EmrB/QacA subfamily drug resistance transporter | |
| 303924 | snp | T | C | missense_variant c.767A>G p.Tyr256Cys | EmrB/QacA subfamily drug resistance transporter | |
| 304670 | snp | A | T | missense_variant c.21T>A p.Asp7Glu | EmrB/QacA subfamily drug resistance transporter | |
| 305427 | snp | T | G | missense_variant c.355A>C p.Lys119Gln | Putative multidrug resistance protein K | |
| 1172444 | snp | A | C | missense_variant c.135A>C p.Glu45Asp | Organic hydroperoxide resistance protein | |
| 1333165 | snp | T | A | missense_variant c.21T>A p.Phe7Leu | bioflm peroxide resistance protein BsmA | |
| 1333196 | snp | A | G | missense_variant c.52A>G p.Ile18Val | bioflm peroxide resistance protein BsmA | |
| 1333235 | snp | A | G | missense_variant c.91A>G p.Asn31Asp | bioflm peroxide resistance protein BsmA | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1717563 | snp | C | T | missense_variant c.680G>A p.Ser227Asn | EmrB/QacA family drug resistance transporter | |
| 1718220 | snp | G | A | missense_variant c.23C>T p.Ala8Val | EmrB/QacA family drug resistance transporter | |
| 1750745 | snp | G | A | missense_variant c.292G>A p.Val98Ile | emrD | multidrug resistance protein D |
| 1750949 | snp | A | G | missense_variant c.496A>G p.Thr166Ala | emrD | multidrug resistance protein D |
| 1912579 | snp | G | A | missense_variant c.208G>A p.Ala70Thr | 6-N-hydroxylaminopurine resistance protein | |
| 1912849 | snp | C | A | missense_variant c.478C>A p.Leu160Ile | 6-N-hydroxylaminopurine resistance protein | |
| 1912886 | snp | A | T | missense_variant c.515A>T p.Tyr172Phe | 6-N-hydroxylaminopurine resistance protein | |
| 1912934 | snp | A | T | missense_variant c.563A>T p.Tyr188Phe | 6-N-hydroxylaminopurine resistance protein | |
| 1912999 | snp | T | A | missense_variant c.628T>A p.Leu210Ile | 6-N-hydroxylaminopurine resistance protein | |
| 2110350 | snp | A | G | missense_variant c.434T>C p.Val145Ala | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2133974 | snp | T | C | missense_variant c.128T>C p.Val43Ala | tellurium resistance protein TerC | |
| 2134454 | snp | A | T | missense_variant c.608A>T p.Glu203Val | tellurium resistance protein TerC | |
| 2712786 | snp | G | A | missense_variant c.7G>A p.Val3Ile | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2751262 | snp | A | T | missense_variant c.190T>A p.Ser64Thr | copper resistance protein | |
| 2751301 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | copper resistance protein | |
| 2877327 | snp | A | T | missense_variant c.1051T>A p.Ser351Thr | quinolone resistance protein | |
| 2877627 | snp | T | C | missense_variant c.751A>G p.Ile251Val | quinolone resistance protein | |
| 2877844 | snp | C | T | missense_variant c.534G>A p.Met178Ile | quinolone resistance protein | |
| 2878099 | snp | C | T | missense_variant c.279G>A p.Met93Ile | quinolone resistance protein | |
| 2878142 | snp | T | A | missense_variant c.236A>T p.Tyr79Phe | quinolone resistance protein | |
| 2955853 | snp | A | C | missense_variant c.1285T>G p.Ser429Ala | EmrB/QacA family drug resistance transporter | |
| 2956361 | snp | A | T | missense_variant c.777T>A p.Asp259Glu | EmrB/QacA family drug resistance transporter | |
| 3472223 | snp | C | T | missense_variant c.1094G>A p.Ser365Asn | phage resistance protein | |
| 3472445 | snp | T | C | missense_variant c.872A>G p.Lys291Arg | phage resistance protein | |
| 3472599 | snp | G | C | missense_variant c.718C>G p.Leu240Val | phage resistance protein | |
| 3472622 | snp | G | T | missense_variant c.695C>A p.Thr232Lys | phage resistance protein | |
| 3473147 | snp | T | A | missense_variant c.170A>T p.Tyr57Phe | phage resistance protein | |
| 3473197 | snp | G | T | missense_variant c.120C>A p.Asp40Glu | phage resistance protein | |
| 3506330 | snp | G | A | missense_variant c.152G>A p.Ser51Asn | multidrug resistance outer membrane protein MdtQ | |
| 3506390 | snp | A | C | missense_variant c.212A>C p.Glu71Ala | multidrug resistance outer membrane protein MdtQ | |
| 3506469 | snp | G | T | missense_variant c.291G>T p.Glu97Asp | multidrug resistance outer membrane protein MdtQ | |
| 3506668 | snp | C | A | missense_variant c.490C>A p.Gln164Lys | multidrug resistance outer membrane protein MdtQ | |
| 3506930 | snp | T | C | missense_variant c.752T>C p.Val251Ala | multidrug resistance outer membrane protein MdtQ | |
| 3506959 | snp | C | A | missense_variant c.781C>A p.His261Asn | multidrug resistance outer membrane protein MdtQ | |
| 3507514 | snp | A | G | missense_variant c.1336A>G p.Thr446Ala | multidrug resistance outer membrane protein MdtQ | |
| 3507592 | snp | G | A | missense_variant c.1414G>A p.Gly472Ser | multidrug resistance outer membrane protein MdtQ | |
| 3813589 | snp | T | C | missense_variant c.71T>C p.Val24Ala | copper resistance protein CopC | |
| 3813807 | snp | T | A | missense_variant c.289T>A p.Ser97Thr | copper resistance protein CopC | |
| 4212417 | snp | G | C | missense_variant c.680G>C p.Cys227Ser | methyl viologen resistance protein SmvA | |
| 4212746 | snp | G | A | missense_variant c.1009G>A p.Val337Ile | methyl viologen resistance protein SmvA | |
| 4213164 | snp | G | C | missense_variant c.1427G>C p.Gly476Ala | methyl viologen resistance protein SmvA | |
| 4213172 | snp | C | A | missense_variant c.1435C>A p.Leu479Met | methyl viologen resistance protein SmvA | |
| 4213184 | snp | G | A | missense_variant c.1447G>A p.Val483Ile | methyl viologen resistance protein SmvA | |
| 4308408 | snp | A | C | missense_variant c.134T>G p.Met45Arg | multiple drug resistance protein MarC | |
| 4309678 | snp | C | T | missense_variant c.14C>T p.Ala5Val | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309741 | snp | A | G | missense_variant c.77A>G p.Asn26Ser | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4331893 | snp | G | T | missense_variant c.574C>A p.Leu192Ile | tellurite resistance protein TehB | |
| 4331998 | snp | T | G | missense_variant c.469A>C p.Asn157His | tellurite resistance protein TehB | |
| 4332137 | snp | A | T | missense_variant c.330T>A p.Asn110Lys | tellurite resistance protein TehB | |
| 4332229 | snp | C | G | missense_variant c.238G>C p.Glu80Gln | tellurite resistance protein TehB | |
| 4332397 | snp | T | A | missense_variant c.70A>T p.Ser24Cys | tellurite resistance protein TehB | |
| 4332692 | snp | G | A | missense_variant c.770C>T p.Ala257Val | tellurite resistance protein TehA | |
| 4562567 | snp | G | A | missense_variant c.616G>A p.Asp206Asn | fusaric acid resistance protein | |
| 4563106 | snp | T | A | missense_variant c.1155T>A p.Asp385Glu | fusaric acid resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 29547 | snp | G | A | missense_variant c.884G>A p.Ser295Asn | multidrug resistance protein MdtH | |
| 303906 | snp | C | T | missense_variant c.785G>A p.Arg262Lys | EmrB/QacA subfamily drug resistance transporter | |
| 303916 | snp | T | G | missense_variant c.775A>C p.Met259Leu | EmrB/QacA subfamily drug resistance transporter | |
| 304668 | snp | T | C | missense_variant c.23A>G p.Asn8Ser | EmrB/QacA subfamily drug resistance transporter | |
| 304736 | snp | T | C | missense_variant c.1046A>G p.Lys349Arg | Putative multidrug resistance protein K | |
| 305120 | snp | C | T | missense_variant c.662G>A p.Arg221Lys | Putative multidrug resistance protein K | |
| 305514 | snp | C | G | missense_variant c.268G>C p.Val90Leu | Putative multidrug resistance protein K | |
| 790180 | snp | T | C | missense_variant c.296A>G p.Gln99Arg | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 790210 | snp | T | G | missense_variant c.266A>C p.Glu89Ala | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 1333301 | snp | A | T | missense_variant c.157A>T p.Met53Leu | bioflm peroxide resistance protein BsmA | |
| 1333421 | snp | G | T | missense_variant c.277G>T p.Ala93Ser | bioflm peroxide resistance protein BsmA | |
| 1333439 | snp | A | C | missense_variant c.295A>C p.Ser99Arg | bioflm peroxide resistance protein BsmA | |
| 1716706 | snp | G | A | missense_variant c.1537C>T p.Arg513Trp | EmrB/QacA family drug resistance transporter | |
| 1716804 | snp | A | G | missense_variant c.1439T>C p.Val480Ala | EmrB/QacA family drug resistance transporter | |
| 1716838 | snp | T | G | missense_variant c.1405A>C p.Met469Leu | EmrB/QacA family drug resistance transporter | |
| 1716962 | snp | G | C | missense_variant c.1281C>G p.Ile427Met | EmrB/QacA family drug resistance transporter | |
| 1717665 | snp | C | T | missense_variant c.578G>A p.Arg193His | EmrB/QacA family drug resistance transporter | |
| 1751045 | snp | G | A | missense_variant c.592G>A p.Ala198Thr | emrD | multidrug resistance protein D |
| 1751337 | snp | A | G | missense_variant c.884A>G p.Asp295Gly | emrD | multidrug resistance protein D |
| 1751345 | snp | T | A | missense_variant c.892T>A p.Ser298Thr | emrD | multidrug resistance protein D |
| 1912498 | snp | C | G | missense_variant c.127C>G p.Gln43Glu | 6-N-hydroxylaminopurine resistance protein | |
| 1912533 | snp | T | G | missense_variant c.162T>G p.Asp54Glu | 6-N-hydroxylaminopurine resistance protein | |
| 2110653 | snp | T | C | missense_variant c.131A>G p.Glu44Gly | cusR | two-component system, OmpR family, copper resistance phosphate |
| 2134096 | snp | G | A | missense_variant c.250G>A p.Val84Ile | tellurium resistance protein TerC | |
| 2134459 | snp | A | C | missense_variant c.613A>C p.Lys205Gln | tellurium resistance protein TerC | |
| 2134864 | snp | G | A | missense_variant c.1018G>A p.Glu340Lys | tellurium resistance protein TerC | |
| 2713345 | snp | T | C | missense_variant c.566T>C p.Val189Ala | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2713393 | snp | A | G | missense_variant c.614A>G p.Lys205Arg | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2713470 | snp | C | A | missense_variant c.691C>A p.His231Asn | putative glyoxalase/bleomycin resistance protein/dioxygenase | |
| 2751162 | snp | T | A | missense_variant c.290A>T p.Gln97Leu | copper resistance protein | |
| 2751325 | snp | A | G | missense_variant c.127T>C p.Ser43Pro | copper resistance protein | |
| 2751426 | snp | A | G | missense_variant c.26T>C p.Ile9Thr | copper resistance protein | |
| 2877294 | snp | C | T | missense_variant c.1084G>A p.Val362Ile | quinolone resistance protein | |
| 2877975 | snp | C | G | missense_variant c.403G>C p.Glu135Gln | quinolone resistance protein | |
| 2878059 | snp | G | T | missense_variant c.319C>A p.Leu107Met | quinolone resistance protein | |
| 2878099 | snp | C | G | missense_variant c.279G>C p.Met93Ile | quinolone resistance protein | |
| 2878128 | snp | G | T | missense_variant c.250C>A p.Leu84Met | quinolone resistance protein | |
| 2955739 | snp | G | T | missense_variant c.1399C>A p.Leu467Ile | EmrB/QacA family drug resistance transporter | |
| 2956830 | snp | C | T | missense_variant c.308G>A p.Ser103Asn | EmrB/QacA family drug resistance transporter | |
| 3506745 | snp | C | G | missense_variant c.567C>G p.Asp189Glu | multidrug resistance outer membrane protein MdtQ | |
| 3506755 | snp | G | C | missense_variant c.577G>C p.Glu193Gln | multidrug resistance outer membrane protein MdtQ | |
| 3507113 | snp | G | A | missense_variant c.935G>A p.Arg312Lys | multidrug resistance outer membrane protein MdtQ | |
| 3507384 | snp | T | A | missense_variant c.1206T>A p.Asn402Lys | multidrug resistance outer membrane protein MdtQ | |
| 3507390 | snp | C | A | missense_variant c.1212C>A p.His404Gln | multidrug resistance outer membrane protein MdtQ | |
| 3507400 | snp | A | G | missense_variant c.1222A>G p.Ile408Val | multidrug resistance outer membrane protein MdtQ | |
| 4212407 | snp | A | C | missense_variant c.670A>C p.Met224Leu | methyl viologen resistance protein SmvA | |
| 4212647 | snp | G | C | missense_variant c.910G>C p.Val304Leu | methyl viologen resistance protein SmvA | |
| 4213058 | snp | A | G | missense_variant c.1321A>G p.Met441Val | methyl viologen resistance protein SmvA | |
| 4308039 | snp | G | C | missense_variant c.503C>G p.Ala168Gly | multiple drug resistance protein MarC | |
| 4308085 | snp | G | C | missense_variant c.457C>G p.His153Asp | multiple drug resistance protein MarC | |
| 4308254 | snp | G | T | missense_variant c.288C>A p.His96Gln | multiple drug resistance protein MarC | |
| 4308416 | snp | C | A | missense_variant c.126G>T p.Gln42His | multiple drug resistance protein MarC | |
| 4309692 | snp | A | G | missense_variant c.28A>G p.Thr10Ala | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309707 | snp | G | T | missense_variant c.43G>T p.Val15Phe | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309713 | snp | G | A | missense_variant c.49G>A p.Gly17Ser | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309720 | snp | G | C | missense_variant c.56G>C p.Ser19Thr | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4309776 | snp | A | T | missense_variant c.112A>T p.Met38Leu | multiple antibiotic resistance regulatory periplasmic protein MarB | |
| 4332198 | snp | G | T | missense_variant c.269C>A p.Thr90Asn | tellurite resistance protein TehB | |
| 4332204 | snp | T | C | missense_variant c.263A>G p.Asn88Ser | tellurite resistance protein TehB | |
| 4332463 | snp | T | C | missense_variant c.4A>G p.Thr2Ala | tellurite resistance protein TehB | |
| 4332526 | snp | C | T | missense_variant c.936G>A p.Met312Ile | tellurite resistance protein TehA | |
| 4562255 | snp | T | G | missense_variant c.304T>G p.Ser102Ala | fusaric acid resistance protein | |
| 4562425 | snp | G | T | missense_variant c.474G>T p.Met158Ile | fusaric acid resistance protein | |
| 4562569 | snp | C | A | missense_variant c.618C>A p.Asp206Glu | fusaric acid resistance protein | |
| 4563261 | snp | C | G | missense_variant c.1310C>G p.Thr437Ser | fusaric acid resistance protein |
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (genome) and query (antibiotic resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Resistance | Antibiotic that the gene confers resistance to |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00122 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00135 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00006 | 17148 | 18290 | blaACT-9_1 | 0/0 | 100.0 | 99.1 | HQ693810 | blaACT-9 | |
| contig00059 | 21958 | 22833 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00135 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00103 | 5401 | 5883 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00091 | 5018 | 5443 | fosA_7 | 0/0 | 100.0 | 95.3 | AEXB01000013 | fosA | Fosfomycin |
| contig00108 | 4404 | 5048 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00120 | 1429 | 2697 | tet(A)_6 | 1/22 | 97.8 | 93.2 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00122 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00135 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00006 | 17145 | 18290 | ACT-28 | 0/0 | 100.0 | 100.0 | KJ207206:751-1897 | ACT-28 is a beta-lactamase. From the Lahey list of ACT beta-lactamases. | carbapenem, cephalosporin, cephamycin, penam |
| contig00059 | 21958 | 22833 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00103 | 5401 | 5883 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00080 | 5981 | 7174 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 93.6 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00091 | 5018 | 5443 | FosA2 | 0/0 | 100.0 | 91.8 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00135 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00108 | 4367 | 5048 | QnrB17 | 1/1 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00120 | 1429 | 2697 | tet(A) | 1/22 | 97.8 | 93.2 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00122 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00006 | 17148 | 18290 | (Bla)blaACT-9 | 0/0 | 100.0 | 99.1 | HQ693810:1009-2151 | (Bla)blaACT-9 | NA |
| contig00059 | 21958 | 22833 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00135 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00091 | 5018 | 5443 | (Fcyn)FosA2 | 0/0 | 100.0 | 91.8 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00108 | 4367 | 5048 | (Flq)qnrB1 | 1/1 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00120 | 1429 | 2725 | (Tet)tetA | 1/22 | 100.0 | 93.3 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00120 | 757 | 1398 | (Tet)tetR | 1/9 | 98.6 | 93.1 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00103 | 5401 | 5874 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00122 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00135 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00006 | 17145 | 18290 | blaACT-28 | 0/0 | 100 | 100.0 | NG_048614.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-28 | CEPHALOSPORIN |
| contig00059 | 21958 | 22833 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00135 | 578 | 1408 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00103 | 5401 | 5874 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00091 | 5018 | 5443 | fosA | 0/0 | 100 | 95.1 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00095 | 902 | 2521 | mcr-10.1 | 0/0 | 100 | 100.0 | NG_066767.1 | phosphoethanolamine–lipid A transferase MCR-10.1 | COLISTIN |
| contig00108 | 4404 | 5048 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00120 | 1526 | 2725 | tet(A) | 0/0 | 100 | 100.0 | NG_048157.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00122 | 1696 | 2556 | AAC3 | 0/0 | 100.0 | 99.8 | MEG_44 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00080 | 5981 | 7174 | ACRB | 0/0 | 100.0 | 93.6 | MEG_402 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB | NA |
| contig00006 | 17145 | 18392 | ACT | 0/0 | 100.0 | 100.0 | MEG_488 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00103 | 5401 | 5874 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2517 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00091 | 5018 | 5597 | FOSA | 0/0 | 99.7 | 91.5 | MEG_2990 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00135 | 578 | 1408 | OXA | 0/0 | 100.0 | 100.0 | MEG_4980 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00108 | 4367 | 5048 | QNRB | 1/1 | 100.0 | 99.1 | MEG_5928 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB | NA |
| contig00120 | 1526 | 2725 | TETA | 0/0 | 100.0 | 100.0 | MEG_7021 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00077 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00079 | 1540 | 2139 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00081 | 126 | 1090 | ant(3’’)-Ia_1 | 3/7 | 99.3 | 99.1 | X02340 | ant(3’’)-Ia | Streptomycin |
| contig00061 | 8750 | 9553 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00061 | 7914 | 8750 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00023 | 55606 | 56751 | blaCMH-3_1 | 0/0 | 100.0 | 98.6 | KX192165 | blaCMH-3 | |
| contig00061 | 2636 | 3511 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00079 | 579 | 1409 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00061 | 6333 | 7193 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00092 | 350 | 1004 | catA1_1 | 0/0 | 99.2 | 99.8 | V00622 | catA1 | Chloramphenicol |
| contig00047 | 22267 | 22692 | fosA_7 | 0/0 | 100.0 | 95.8 | AEXB01000013 | fosA | Fosfomycin |
| contig00061 | 9614 | 10429 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00077 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00079 | 1540 | 2139 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00081 | 126 | 1090 | ANT(3’’)-IIa | 3/7 | 99.3 | 99.1 | X02340.1:222-1194 | ANT(3’’)-IIa is a aminoglycoside nucleotidyltransferase identified in Acinetobacter spp. via horizontal gene transfer mechanisms. | aminoglycoside |
| contig00061 | 8750 | 9553 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00061 | 7914 | 8750 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00092 | 350 | 1004 | catI | 0/0 | 99.2 | 99.8 | V00622:243-903 | catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii | phenicol |
| contig00023 | 55606 | 56751 | CMH-1 | 0/0 | 100.0 | 98.7 | JQ673557.1:0-1146 | CMH-1 is a class C beta-lactamase gene found in Enterobacter cloacae. | cephalosporin |
| contig00061 | 2636 | 3511 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00028 | 11129 | 12322 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 91.5 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00047 | 22267 | 22692 | FosA2 | 0/0 | 100.0 | 92.0 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00079 | 579 | 1409 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00051 | 21006 | 21380 | ramA | 0/0 | 100.0 | 98.1 | JQ727668:0-375 | RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00061 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00061 | 6333 | 7193 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00077 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00081 | 126 | 937 | (AGly)aadA1-pm | 0/0 | 97.7 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00061 | 8750 | 9553 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00061 | 7914 | 8750 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00023 | 55606 | 56751 | (Bla)blaCMH-1 | 0/0 | 100.0 | 98.7 | JQ673557:1-1146 | (Bla)blaCMH-1 | NA |
| contig00061 | 2636 | 3511 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00079 | 579 | 1409 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00061 | 6333 | 7193 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00047 | 22267 | 22692 | (Fcyn)FosA2 | 0/0 | 100.0 | 92.0 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00092 | 350 | 1004 | (Phe)catA1 | 0/0 | 99.2 | 99.8 | V00622:244-903 | (Phe)catA1 | NA |
| contig00061 | 9614 | 10429 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00077 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00079 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00081 | 126 | 917 | aadA1 | 0/0 | 100.0 | 100.0 | NG_052536.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00061 | 8750 | 9577 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00061 | 7914 | 8750 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00023 | 55606 | 56751 | blaCMH-6 | 0/0 | 100.0 | 99.9 | NG_067134.1 | class C beta-lactamase CMH-6 | BETA-LACTAM |
| contig00061 | 2636 | 3511 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00079 | 579 | 1409 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00061 | 6333 | 7193 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00092 | 350 | 1004 | catA1 | 0/0 | 99.2 | 99.8 | NG_047582.1 | type A-1 chloramphenicol O-acetyltransferase | CHLORAMPHENICOL |
| contig00047 | 22267 | 22692 | fosA | 0/0 | 100.0 | 95.1 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00061 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00077 | 1696 | 2556 | AAC3 | 0/0 | 100.0 | 99.8 | MEG_44 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00028 | 11129 | 12322 | ACRB | 0/0 | 100.0 | 91.5 | MEG_402 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB | NA |
| contig00081 | 126 | 1090 | ANT3-DPRIME | 3/7 | 99.3 | 99.1 | MEG_949 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00061 | 8750 | 9577 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00061 | 7914 | 8750 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1086 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00092 | 339 | 1004 | CATA | 0/0 | 99.2 | 100.0 | MEG_1593 | Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA | NA |
| contig00023 | 55606 | 56751 | CMH | 0/0 | 100.0 | 98.7 | MEG_1753 | Drugs:betalactams:Class_C_betalactamases:CMH | NA |
| contig00036 | 27997 | 28939 | CTX | 0/0 | 100.0 | 98.8 | MEG_2435 | Drugs:betalactams:Class_A_betalactamases:CTX | NA |
| contig00047 | 22113 | 22692 | FOSA | 0/0 | 99.7 | 92.8 | MEG_2990 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00079 | 579 | 1409 | OXA | 0/0 | 100.0 | 100.0 | MEG_4980 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00051 | 21006 | 21380 | RAMA | 0/0 | 100.0 | 98.1 | MEG_6044 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:RAMA | NA |
| contig00061 | 9614 | 10429 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00061 | 5966 | 7211 | TEM | 0/0 | 98.3 | 99.4 | MEG_6875 | Drugs:betalactams:Class_A_betalactamases:TEM | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00094 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00097 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00067 | 8750 | 9553 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00067 | 7914 | 8750 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00046 | 19262 | 20407 | blaACT-7_1 | 0/0 | 100.0 | 99.6 | FJ237368 | blaACT-7 | |
| contig00067 | 2636 | 3511 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00097 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00067 | 6333 | 7193 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00105 | 223 | 877 | catA1_1 | 0/0 | 99.2 | 99.8 | V00622 | catA1 | Chloramphenicol |
| contig00084 | 673 | 1146 | dfrA1_10 | 0/0 | 100.0 | 99.8 | AF203818 | dfrA1 | Trimethoprim |
| contig00072 | 5401 | 5883 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00040 | 5370 | 5795 | fosA_7 | 0/0 | 100.0 | 98.1 | AEXB01000013 | fosA | Fosfomycin |
| contig00073 | 4404 | 5048 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00079 | 3556 | 4422 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00067 | 9614 | 10429 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00085 | 1430 | 2698 | tet(A)_6 | 1/22 | 97.8 | 93.2 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| contig00086 | 1712 | 2958 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00094 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00097 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00046 | 19262 | 20407 | ACT-35 | 0/0 | 100.0 | 99.7 | LC004922:0-1146 | ACT-35 is a beta-lactamase. From the Lahey list of ACT beta-lactamases. | carbapenem, cephalosporin, cephamycin, penam |
| contig00067 | 8750 | 9553 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00067 | 7914 | 8750 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00105 | 223 | 877 | catI | 0/0 | 99.2 | 99.8 | V00622:243-903 | catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii | phenicol |
| contig00067 | 2636 | 3511 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00084 | 673 | 1146 | dfrA1 | 0/0 | 100.0 | 100.0 | KJ541681.1:19526-20000 | dfrA1 is an integron-encoded dihydrofolate reductase | diaminopyrimidine |
| contig00072 | 5401 | 5883 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00040 | 5370 | 5795 | FosA2 | 0/0 | 100.0 | 92.7 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00097 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00073 | 4367 | 5048 | QnrB17 | 1/1 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00079 | 3556 | 4395 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00067 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00067 | 6333 | 7193 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00085 | 1430 | 2698 | tet(A) | 1/22 | 97.8 | 93.2 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| contig00086 | 1712 | 2958 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00094 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00067 | 8750 | 9553 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00067 | 7914 | 8750 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00046 | 19262 | 20407 | (Bla)blaACT-7 | 0/0 | 100.0 | 99.6 | FJ237368:1-1146 | (Bla)blaACT-7 | NA |
| contig00067 | 2636 | 3511 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00097 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00067 | 6333 | 7193 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00040 | 5370 | 5795 | (Fcyn)FosA2 | 0/0 | 100.0 | 92.7 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00073 | 4367 | 5048 | (Flq)qnrB1 | 1/1 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00105 | 223 | 877 | (Phe)catA1 | 0/0 | 99.2 | 99.8 | V00622:244-903 | (Phe)catA1 | NA |
| contig00079 | 3556 | 4395 | (Sul)sul1 | 0/0 | 100.0 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00067 | 9614 | 10429 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00085 | 1430 | 2726 | (Tet)tetA | 1/22 | 100.0 | 93.3 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00086 | 1684 | 2958 | (Tet)tetA | 0/0 | 100.0 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00085 | 758 | 1399 | (Tet)tetR | 1/9 | 98.6 | 93.1 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00086 | 2989 | 3639 | (Tet)tetR | 0/0 | 100.0 | 100.0 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00084 | 673 | 1146 | (Tmt)dfrA1 | 0/0 | 100.0 | 99.8 | JQ794607:474 | (Tmt)dfrA1 | NA |
| contig00072 | 5401 | 5874 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00094 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00097 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00067 | 8750 | 9577 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00067 | 7914 | 8750 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00046 | 19262 | 20407 | blaACT-73 | 0/0 | 100.0 | 99.9 | NG_066689.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-73 | CEPHALOSPORIN |
| contig00067 | 2636 | 3511 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00097 | 578 | 1408 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00067 | 6333 | 7193 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00105 | 223 | 877 | catA1 | 0/0 | 99.2 | 99.8 | NG_047582.1 | type A-1 chloramphenicol O-acetyltransferase | CHLORAMPHENICOL |
| contig00084 | 673 | 1146 | dfrA1 | 0/0 | 100.0 | 99.8 | NG_047677.1 | trimethoprim-resistant dihydrofolate reductase DfrA1 | TRIMETHOPRIM |
| contig00072 | 5401 | 5874 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00040 | 5370 | 5795 | fosA | 0/0 | 100.0 | 97.4 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00073 | 4404 | 5048 | qnrB1 | 0/0 | 100.0 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00079 | 3556 | 4395 | sul1 | 0/0 | 100.0 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00067 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00085 | 1527 | 2726 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048157.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| contig00086 | 1684 | 2883 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00094 | 1696 | 2556 | AAC3 | 0/0 | 100.0 | 99.8 | MEG_44 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00046 | 18872 | 19103 | ACT | 0/0 | 100.0 | 97.0 | MEG_497 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00046 | 19263 | 20509 | ACT | 0/0 | 100.0 | 99.4 | MEG_491 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00067 | 8750 | 9577 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00067 | 7914 | 8750 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1086 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00105 | 212 | 877 | CATA | 0/0 | 99.2 | 100.0 | MEG_1593 | Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA | NA |
| contig00052 | 16991 | 17933 | CTX | 0/0 | 100.0 | 95.7 | MEG_2435 | Drugs:betalactams:Class_A_betalactamases:CTX | NA |
| contig00072 | 5401 | 5874 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2517 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00084 | 673 | 1146 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2528 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00040 | 5370 | 5795 | FOSA | 0/0 | 100.0 | 98.1 | MEG_2999 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00097 | 578 | 1408 | OXA | 0/0 | 100.0 | 100.0 | MEG_4980 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00073 | 4367 | 5048 | QNRB | 1/1 | 100.0 | 99.1 | MEG_5928 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB | NA |
| contig00079 | 3429 | 4396 | SULI | 0/0 | 100.0 | 100.0 | MEG_6615 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI | NA |
| contig00067 | 9614 | 10429 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00067 | 5966 | 7211 | TEM | 0/0 | 98.3 | 99.4 | MEG_6875 | Drugs:betalactams:Class_A_betalactamases:TEM | NA |
| contig00085 | 1527 | 2726 | TETA | 0/0 | 100.0 | 100.0 | MEG_7021 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
| contig00086 | 1684 | 2958 | TETA | 0/0 | 100.0 | 100.0 | MEG_7024 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00091 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00095 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00100 | 462 | 1426 | ant(3’’)-Ia_1 | 3/7 | 99.3 | 99.1 | X02340 | ant(3’’)-Ia | Streptomycin |
| contig00056 | 8750 | 9553 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00056 | 7914 | 8750 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00036 | 19316 | 20454 | blaACT-16_1 | 0/0 | 99.9 | 99.5 | AB737978 | blaACT-16 | |
| contig00056 | 2636 | 3511 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00095 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00056 | 6333 | 7193 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00102 | 350 | 1004 | catA1_1 | 0/0 | 99.2 | 99.8 | V00622 | catA1 | Chloramphenicol |
| contig00074 | 5401 | 5883 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00064 | 6965 | 7390 | fosA_1 | 0/0 | 100.0 | 96.0 | M85195 | fosA | Fosfomycin |
| contig00076 | 4405 | 5049 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00056 | 9614 | 10429 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00083 | 1429 | 2697 | tet(A)_6 | 1/22 | 97.8 | 93.2 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00091 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00095 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00036 | 19309 | 20454 | ACT-25 | 0/0 | 100.0 | 100.0 | KJ207208:539-1685 | ACT-25 is a beta-lactamase. From the Lahey list of ACT beta-lactamases. | carbapenem, cephalosporin, cephamycin, penam |
| contig00100 | 462 | 1426 | ANT(3’’)-IIa | 3/7 | 99.3 | 99.1 | X02340.1:222-1194 | ANT(3’’)-IIa is a aminoglycoside nucleotidyltransferase identified in Acinetobacter spp. via horizontal gene transfer mechanisms. | aminoglycoside |
| contig00056 | 8750 | 9553 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00056 | 7914 | 8750 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00102 | 350 | 1004 | catI | 0/0 | 99.2 | 99.8 | V00622:243-903 | catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii | phenicol |
| contig00056 | 2636 | 3511 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00074 | 5401 | 5883 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00064 | 6965 | 7390 | FosA2 | 0/0 | 100.0 | 92.5 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00095 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00076 | 4368 | 5049 | QnrB17 | 1/1 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00056 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00056 | 6333 | 7193 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00083 | 1429 | 2697 | tet(A) | 1/22 | 97.8 | 93.2 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00091 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00100 | 462 | 1273 | (AGly)aadA1-pm | 0/0 | 97.7 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00056 | 8750 | 9553 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00056 | 7914 | 8750 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00036 | 19309 | 20454 | (Bla)blaACT-16 | 0/0 | 100.0 | 99.7 | :NG_050702 | (Bla)blaACT-16 | NA |
| contig00056 | 2636 | 3511 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00095 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00056 | 6333 | 7193 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00064 | 6965 | 7390 | (Fcyn)FosA2 | 0/0 | 100.0 | 92.5 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00076 | 4368 | 5049 | (Flq)qnrB1 | 1/1 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00102 | 350 | 1004 | (Phe)catA1 | 0/0 | 99.2 | 99.8 | V00622:244-903 | (Phe)catA1 | NA |
| contig00056 | 9614 | 10429 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00083 | 1429 | 2725 | (Tet)tetA | 1/22 | 100.0 | 93.3 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00083 | 757 | 1398 | (Tet)tetR | 1/9 | 98.6 | 93.1 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00074 | 5401 | 5874 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00091 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00095 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00100 | 462 | 1253 | aadA1 | 0/0 | 100.0 | 100.0 | NG_052536.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00056 | 8750 | 9577 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00056 | 7914 | 8750 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00036 | 19309 | 20454 | blaACT-25 | 0/0 | 100.0 | 100.0 | NG_048612.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-25 | CEPHALOSPORIN |
| contig00056 | 2636 | 3511 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00095 | 578 | 1408 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00056 | 6333 | 7193 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00102 | 350 | 1004 | catA1 | 0/0 | 99.2 | 99.8 | NG_047582.1 | type A-1 chloramphenicol O-acetyltransferase | CHLORAMPHENICOL |
| contig00074 | 5401 | 5874 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00064 | 6965 | 7390 | fosA | 0/0 | 100.0 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00076 | 4405 | 5049 | qnrB1 | 0/0 | 100.0 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00056 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00083 | 1526 | 2725 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048157.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00091 | 1696 | 2556 | AAC3 | 0/0 | 100.0 | 99.8 | MEG_44 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00036 | 18919 | 19150 | ACT | 0/0 | 100.0 | 96.5 | MEG_497 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00036 | 19310 | 20556 | ACT | 0/0 | 100.0 | 100.0 | MEG_490 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00100 | 462 | 1426 | ANT3-DPRIME | 3/7 | 99.3 | 99.1 | MEG_949 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00056 | 8750 | 9577 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00056 | 7914 | 8750 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1086 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00102 | 339 | 1004 | CATA | 0/0 | 99.2 | 100.0 | MEG_1593 | Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA | NA |
| contig00008 | 149242 | 150130 | CTX | 0/0 | 100.0 | 95.7 | MEG_2430 | Drugs:betalactams:Class_A_betalactamases:CTX | NA |
| contig00051 | 18608 | 19550 | CTX | 0/0 | 100.0 | 98.8 | MEG_2435 | Drugs:betalactams:Class_A_betalactamases:CTX | NA |
| contig00074 | 5401 | 5874 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2517 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00064 | 6965 | 7546 | FOSA | 0/0 | 100.0 | 93.1 | MEG_2990 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00095 | 578 | 1408 | OXA | 0/0 | 100.0 | 100.0 | MEG_4980 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00076 | 4368 | 5049 | QNRB | 1/1 | 100.0 | 99.1 | MEG_5928 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB | NA |
| contig00056 | 9614 | 10429 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00056 | 5966 | 7211 | TEM | 0/0 | 98.3 | 99.4 | MEG_6875 | Drugs:betalactams:Class_A_betalactamases:TEM | NA |
| contig00083 | 1526 | 2725 | TETA | 0/0 | 100.0 | 100.0 | MEG_7021 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00047 | 1505 | 2293 | aadA5_1 | 0/0 | 100.0 | 100.0 | AF137361 | aadA5 | Streptomycin |
| contig00065 | 963 | 1766 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00065 | 127 | 963 | aph(6)-Id_1 | 0/0 | 100.0 | 99.9 | M28829 | aph(6)-Id | Streptomycin |
| contig00018 | 79503 | 80378 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00029 | 233 | 1093 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00090 | 936 | 1409 | dfrA1_10 | 0/0 | 100.0 | 99.8 | AF203818 | dfrA1 | Trimethoprim |
| contig00047 | 901 | 1374 | dfrA17_1 | 0/0 | 100.0 | 100.0 | FJ460238 | dfrA17 | Trimethoprim |
| contig00001 | 29920 | 31152 | mdf(A)_1 | 0/0 | 100.0 | 97.8 | Y08743 | mdf(A) | |
| contig00096 | 53 | 974 | mph(A)_2 | 1/1 | 100.0 | 99.7 | U36578 | mph(A) | Erythromycin, Azithromycin, Spiramycin, Telithromycin |
| contig00047 | 2813 | 3679 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00065 | 1827 | 2642 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00062 | 643 | 1889 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00047 | 1505 | 2293 | aadA5 | 0/0 | 100.0 | 100.0 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| contig00001 | 411017 | 414166 | acrB | 0/0 | 100.0 | 98.8 | U00096.3:484403-481253 | Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00009 | 127154 | 130267 | acrD | 0/0 | 100.0 | 98.7 | AP009048.1:2586250-2589364 | AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. | aminoglycoside |
| contig00004 | 325108 | 326265 | acrE | 0/0 | 100.0 | 98.8 | U00096:3413863-3415021 | AcrE is a membrane fusion protein similar to AcrA. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00004 | 326277 | 329381 | acrF | 0/0 | 100.0 | 96.6 | U00096:3415032-3418137 | AcrF is a inner membrane transporter similar to AcrB. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00004 | 324047 | 324709 | acrS | 0/0 | 100.0 | 98.3 | U00096:3413465-3412802 | AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. | cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00065 | 963 | 1766 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00065 | 127 | 963 | APH(6)-Id | 0/0 | 100.0 | 99.8 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00004 | 122577 | 123396 | bacA | 0/0 | 99.8 | 98.3 | U00096.3:3204131-3203309 | The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. | peptide |
| contig00006 | 197426 | 198147 | baeR | 0/0 | 99.9 | 97.1 | AP009048.1:2166412-2167135 | BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. | aminocoumarin, aminoglycoside |
| contig00006 | 198144 | 199547 | baeS | 0/0 | 100.0 | 90.6 | AP009048:2165012-2166416 | BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. | aminocoumarin, aminoglycoside |
| contig00013 | 96361 | 97734 | cpxA | 0/0 | 100.0 | 98.5 | BA000007.3:4905062-4903688 | CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. | aminocoumarin, aminoglycoside |
| contig00010 | 15089 | 15721 | CRP | 0/0 | 100.0 | 99.2 | AP009048.1:4154296-4153663 | CRP is a global regulator that represses MdtEF multidrug efflux pump expression. | fluoroquinolone, macrolide, penam |
| contig00018 | 79503 | 80378 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00090 | 936 | 1409 | dfrA1 | 0/0 | 100.0 | 100.0 | KJ541681.1:19526-20000 | dfrA1 is an integron-encoded dihydrofolate reductase | diaminopyrimidine |
| contig00047 | 901 | 1374 | dfrA17 | 0/0 | 100.0 | 100.0 | DQ838665:0-474 | dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00011 | 47795 | 48967 | emrA | 0/0 | 100.0 | 98.0 | AP009048:2810082-2811255 | EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. | fluoroquinolone |
| contig00011 | 48984 | 50522 | emrB | 0/0 | 100.0 | 98.4 | U00096:2812615-2814154 | emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. | fluoroquinolone |
| contig00009 | 222982 | 224037 | emrK | 0/0 | 100.0 | 97.7 | D78168:536-1592 | emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. | tetracycline |
| contig00011 | 47138 | 47668 | emrR | 0/0 | 100.0 | 98.5 | U00096.3:2810769-2811300 | EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. | fluoroquinolone |
| contig00009 | 224037 | 225575 | emrY | 0/0 | 100.0 | 97.7 | D78168:1591-3130 | emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. | tetracycline |
| contig00002 | 146370 | 148013 | eptA | 0/0 | 100.0 | 91.3 | AP009048:4340268-4338624 | PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. | peptide |
| contig00001 | 409801 | 410994 | Escherichia_coli_acrA | 0/0 | 100.0 | 99.1 | U00096.3:485619-484425 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00002 | 203855 | 204988 | Escherichia_coli_ampC | 0/0 | 100.0 | 97.8 | U00096.3:4378944-4377810 | A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. | cephalosporin, penam |
| contig00001 | 498903 | 500060 | Escherichia_coli_ampH | 0/0 | 100.0 | 97.1 | AP012030.1:396711-395553 | AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. | cephalosporin, penam |
| contig00003 | 272579 | 272911 | Escherichia_coli_emrE | 0/0 | 100.0 | 92.2 | Z11877.1:485-818 | Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation | macrolide |
| contig00001 | 29920 | 31152 | Escherichia_coli_mdfA | 0/0 | 100.0 | 96.3 | JQ394987:0-1233 | Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. | benzalkonium_chloride, rhodamine, tetracycline |
| contig00009 | 221844 | 222458 | evgA | 0/0 | 100.0 | 99.0 | BA000007.3:3212025-3212640 | EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. | fluoroquinolone, macrolide, penam, tetracycline |
| contig00009 | 218246 | 221839 | evgS | 0/0 | 100.0 | 96.3 | U00096:2484373-2487967 | EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | fluoroquinolone, macrolide, penam, tetracycline |
| contig00010 | 188711 | 189439 | gadW | 0/0 | 100.0 | 99.9 | CP015085.1:2552440-2551711 | GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. | fluoroquinolone, macrolide, penam |
| contig00010 | 189808 | 190632 | gadX | 0/0 | 100.0 | 93.7 | AP009048.1:3974604-3975429 | GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. | fluoroquinolone, macrolide, penam |
| contig00008 | 129837 | 130250 | H-NS | 0/0 | 100.0 | 99.3 | BA000007.3:1738104-1737690 | H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. | cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline |
| contig00001 | 185274 | 185946 | kdpE | 0/0 | 99.3 | 95.5 | U00096.3:721733-721055 | kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. | aminoglycoside |
| contig00017 | 29610 | 29993 | marA | 0/0 | 100.0 | 99.0 | AP009048.1:1621287-1621671 | In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00006 | 207160 | 208407 | mdtA | 0/0 | 100.0 | 95.8 | U00096:2154015-2155263 | MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. | aminocoumarin |
| contig00006 | 204038 | 207160 | mdtB | 0/0 | 100.0 | 96.1 | U00096:2155262-2158385 | MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. | aminocoumarin |
| contig00006 | 200960 | 204037 | mdtC | 0/0 | 100.0 | 94.0 | U00096:2158385-2161463 | MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. | aminocoumarin |
| contig00010 | 184053 | 185210 | mdtE | 0/0 | 100.0 | 98.3 | AP009048.1:3981183-3980025 | MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. | fluoroquinolone, macrolide, penam |
| contig00010 | 185235 | 188348 | mdtF | 0/0 | 100.0 | 97.1 | U00096:3660413-3663527 | MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. | fluoroquinolone, macrolide, penam |
| contig00007 | 89449 | 90675 | mdtG | 0/0 | 100.0 | 98.4 | CP000800.1:1192954-1191727 | The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. | fosfomycin |
| contig00007 | 79611 | 80819 | mdtH | 0/0 | 100.0 | 98.3 | U00096:1125326-1124117 | Multidrug resistance protein MdtH | fluoroquinolone |
| contig00028 | 261 | 1472 | mdtM | 0/0 | 98.3 | 95.5 | U00096.3:4568519-4567286 | Multidrug resistance protein MdtM | acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol |
| contig00002 | 116125 | 117156 | mdtN | 0/0 | 100.0 | 96.3 | AP009048.1:4307588-4306556 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. | acridine_dye, nucleoside |
| contig00002 | 114074 | 116125 | mdtO | 0/0 | 100.0 | 97.2 | AP009048.1:4306557-4304505 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00002 | 112611 | 114077 | mdtP | 0/0 | 100.0 | 98.1 | AP009048.1:4304509-4303042 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00096 | 69 | 974 | mphA | 0/0 | 100.0 | 100.0 | D16251.1:2531-1625 | The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. | macrolide |
| contig00007 | 215331 | 217079 | msbA | 0/0 | 100.0 | 98.1 | U00096.3:966620-968369 | MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. | nitroimidazole |
| contig00019 | 2059 | 3027 | pmrF | 0/0 | 100.0 | 97.6 | U00096:2367070-2368039 | PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | peptide |
| contig00047 | 2840 | 3679 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00065 | 1827 | 2642 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00029 | 233 | 1093 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00062 | 643 | 1889 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| contig00004 | 98687 | 100174 | tolC | 0/0 | 100.0 | 98.2 | FJ768952:0-1488 | TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan |
| contig00006 | 262232 | 263398 | ugd | 0/0 | 100.0 | 100.0 | U00096:2099613-2098446 | PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin | peptide |
| contig00006 | 56177 | 57820 | yojI | 0/0 | 100.0 | 97.3 | U00096.3:2308615-2306971 | YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. | peptide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00090 | 52 | 853 | (AGly)aadA1-pm | 0/0 | 96.5 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00047 | 1505 | 2293 | (AGly)aadA5 | 0/0 | 100.0 | 100.0 | AF137361:64-852 | (AGly)aadA5 | NA |
| contig00065 | 963 | 1766 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00065 | 127 | 963 | (AGly)strB | 0/0 | 100.0 | 99.9 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00002 | 203855 | 204988 | (Bla)AmpC2_Ecoli | 0/0 | 100.0 | 97.8 | CP002970:332756-333889 | (Bla)AmpC2_Ecoli | NA |
| contig00001 | 498903 | 500060 | (Bla)ampH_Ecoli | 0/0 | 100.0 | 97.1 | AP012030:395554-396711 | (Bla)ampH_Ecoli | NA |
| contig00018 | 79503 | 80378 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00029 | 233 | 1093 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00001 | 244491 | 246392 | (Bla)Penicillin_Binding_Protein_Ecoli | 0/0 | 100.0 | 98.7 | CP002291:664439-666340 | (Bla)Penicillin_Binding_Protein_Ecoli | NA |
| contig00096 | 69 | 974 | (MLS)mph(A) | 0/0 | 100.0 | 100.0 | DQ445270:1626-2531 | (MLS)mph(A) | NA |
| contig00047 | 2840 | 3679 | (Sul)sul1 | 0/0 | 100.0 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00065 | 1827 | 2642 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00062 | 643 | 1917 | (Tet)tetA | 0/0 | 100.0 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00062 | 1 | 612 | (Tet)tetR | 1/24 | 94.0 | 96.2 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00090 | 936 | 1409 | (Tmt)dfrA1 | 0/0 | 100.0 | 99.8 | JQ794607:474 | (Tmt)dfrA1 | NA |
| contig00047 | 901 | 1374 | (Tmt)dfrA17 | 0/0 | 100.0 | 100.0 | AB126604:98-571 | (Tmt)dfrA17 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00090 | 52 | 843 | aadA1 | 0/0 | 100 | 99.9 | NG_052230.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00047 | 1505 | 2293 | aadA5 | 0/0 | 100 | 100.0 | NG_047357.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| contig00065 | 963 | 1790 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00065 | 127 | 963 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047466.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00018 | 79503 | 80378 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00002 | 203855 | 204988 | blaEC-5 | 0/0 | 100 | 99.5 | NG_049085.1 | cephalosporin-hydrolyzing class C beta-lactamase EC-5 | CEPHALOSPORIN |
| contig00029 | 233 | 1093 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00090 | 936 | 1409 | dfrA1 | 0/0 | 100 | 99.8 | NG_047677.1 | trimethoprim-resistant dihydrofolate reductase DfrA1 | TRIMETHOPRIM |
| contig00047 | 901 | 1374 | dfrA17 | 0/0 | 100 | 99.8 | NG_047710.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | TRIMETHOPRIM |
| contig00096 | 53 | 974 | mph(A) | 1/1 | 100 | 99.7 | NG_047986.1 | Mph(A) family macrolide 2’-phosphotransferase | MACROLIDE |
| contig00047 | 2840 | 3679 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00065 | 1827 | 2642 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00062 | 718 | 1917 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00001 | 409801 | 410994 | ACRA | 0/0 | 100.0 | 99.1 | MEG_399 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA | NA |
| contig00001 | 411017 | 414166 | ACRB | 0/0 | 100.0 | 98.8 | MEG_401 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB | NA |
| contig00009 | 127154 | 130267 | ACRD | 0/0 | 100.0 | 98.7 | MEG_407 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD | NA |
| contig00004 | 325108 | 326265 | ACRE | 0/0 | 100.0 | 98.8 | MEG_408 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE | NA |
| contig00004 | 326277 | 329381 | ACRF | 0/0 | 100.0 | 96.6 | MEG_409 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF | NA |
| contig00004 | 324047 | 324709 | ACRS | 0/0 | 100.0 | 98.3 | MEG_415 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS | NA |
| contig00001 | 498903 | 500060 | AMPH | 0/0 | 100.0 | 97.1 | MEG_729 | Drugs:betalactams:Penicillin_binding_protein:AMPH | NA |
| contig00047 | 1505 | 2293 | ANT3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_928 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00090 | 52 | 853 | ANT3-DPRIME | 0/0 | 96.5 | 99.9 | MEG_915 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00065 | 963 | 1790 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00065 | 127 | 963 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1084 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00006 | 220734 | 222586 | ASMA | 0/0 | 100.0 | 97.8 | MEG_1180 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA | NA |
| contig00004 | 122577 | 123396 | BACA | 0/0 | 99.8 | 98.5 | MEG_1189 | Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA | NA |
| contig00006 | 197426 | 198147 | BAER | 0/0 | 99.9 | 97.1 | MEG_1192 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER | NA |
| contig00006 | 198144 | 199547 | BAES | 0/0 | 100.0 | 90.6 | MEG_1193 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES | NA |
| contig00006 | 81453 | 82643 | BCR | 0/0 | 100.0 | 96.6 | MEG_1210 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR | NA |
| contig00002 | 203855 | 204988 | BLAEC | 0/0 | 100.0 | 99.5 | MEG_1275 | Drugs:betalactams:Class_C_betalactamases:BLAEC | NA |
| contig00013 | 95666 | 96364 | CPXAR | 0/0 | 100.0 | 97.8 | MEG_2118 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR | NA |
| contig00013 | 96361 | 97734 | CPXAR | 0/0 | 100.0 | 98.9 | MEG_2121 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR | NA |
| contig00010 | 15089 | 15721 | CRP | 0/0 | 100.0 | 99.2 | MEG_2132 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP | NA |
| contig00047 | 901 | 1374 | DFRA | 0/0 | 100.0 | 100.0 | MEG_2547 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00090 | 936 | 1409 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2528 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00011 | 47795 | 48967 | EMRA | 0/0 | 100.0 | 98.0 | MEG_2722 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA | NA |
| contig00011 | 48984 | 50522 | EMRB | 0/0 | 100.0 | 98.4 | MEG_2725 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB | NA |
| contig00016 | 22543 | 23733 | EMRD | 0/0 | 100.0 | 97.6 | MEG_2729 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD | NA |
| contig00009 | 222874 | 224037 | EMRK | 0/0 | 100.0 | 97.4 | MEG_2732 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK | NA |
| contig00011 | 47138 | 47668 | EMRR | 0/0 | 100.0 | 98.5 | MEG_2734 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR | NA |
| contig00009 | 224037 | 225575 | EMRY | 0/0 | 100.0 | 97.7 | MEG_2736 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY | NA |
| contig00002 | 146370 | 148013 | EPTA | 0/0 | 100.0 | 91.3 | MEG_2739 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA | NA |
| contig00009 | 218246 | 221839 | EVGS | 0/0 | 100.0 | 97.4 | MEG_2869 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS | NA |
| contig00010 | 188711 | 189439 | GADW | 0/0 | 100.0 | 99.9 | MEG_3082 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW | NA |
| contig00010 | 189808 | 190632 | GADX | 0/0 | 100.0 | 93.7 | MEG_3083 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX | NA |
| contig00008 | 129837 | 130250 | HNS | 0/0 | 100.0 | 99.3 | MEG_3271 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS | NA |
| contig00001 | 185274 | 185946 | KDPE | 0/0 | 99.3 | 95.5 | MEG_3448 | Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE | NA |
| contig00017 | 29604 | 29993 | MARA | 0/0 | 100.0 | 99.0 | MEG_3662 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA | NA |
| contig00017 | 29155 | 29589 | MARR | 0/0 | 100.0 | 97.9 | MEG_3663 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR | NA |
| contig00001 | 29920 | 31152 | MDFA | 0/0 | 100.0 | 97.9 | MEG_3737 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA | NA |
| contig00006 | 207160 | 208407 | MDTA | 0/0 | 100.0 | 95.8 | MEG_3746 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA | NA |
| contig00006 | 204038 | 207160 | MDTB | 0/0 | 100.0 | 96.1 | MEG_3747 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB | NA |
| contig00006 | 200960 | 204037 | MDTC | 0/0 | 100.0 | 94.0 | MEG_3749 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC | NA |
| contig00010 | 184053 | 185210 | MDTE | 0/0 | 100.0 | 98.3 | MEG_3751 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE | NA |
| contig00010 | 185235 | 188348 | MDTF | 0/0 | 100.0 | 97.1 | MEG_3752 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF | NA |
| contig00007 | 89449 | 90675 | MDTG | 0/0 | 100.0 | 98.5 | MEG_3753 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG | NA |
| contig00007 | 79611 | 80819 | MDTH | 0/0 | 100.0 | 98.3 | MEG_3755 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH | NA |
| contig00017 | 60558 | 60887 | MDTI | 0/0 | 100.0 | 98.8 | MEG_3756 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI | NA |
| contig00017 | 60874 | 61239 | MDTJ | 0/0 | 100.0 | 98.4 | MEG_3757 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ | NA |
| contig00003 | 13420 | 14792 | MDTK | 0/0 | 99.9 | 97.7 | MEG_3759 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK | NA |
| contig00028 | 261 | 1472 | MDTM | 0/0 | 98.3 | 95.5 | MEG_3761 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM | NA |
| contig00002 | 116125 | 117156 | MDTN | 0/0 | 100.0 | 96.3 | MEG_3763 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN | NA |
| contig00002 | 114074 | 116125 | MDTO | 0/0 | 100.0 | 97.2 | MEG_3764 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO | NA |
| contig00002 | 112611 | 114077 | MDTP | 0/0 | 100.0 | 98.1 | MEG_3765 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP | NA |
| contig00096 | 53 | 974 | MPHA | 1/1 | 100.0 | 99.7 | MEG_4030 | Drugs:MLS:Macrolide_phosphotransferases:MPHA | NA |
| contig00007 | 215331 | 217079 | MSBA | 0/0 | 100.0 | 98.1 | MEG_4061 | Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA | NA |
| contig00003 | 272579 | 272911 | MVRC | 0/0 | 100.0 | 92.2 | MEG_4103 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC | NA |
| contig00001 | 244491 | 246392 | PBP2 | 0/0 | 100.0 | 98.7 | MEG_5400 | Drugs:betalactams:Penicillin_binding_protein:PBP2 | NA |
| contig00019 | 2059 | 3027 | PMRF | 0/0 | 100.0 | 97.6 | MEG_5801 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF | NA |
| contig00005 | 47049 | 47918 | ROBA | 0/0 | 100.0 | 99.7 | MEG_6082 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA | NA |
| contig00002 | 84258 | 84580 | SOXS | 0/0 | 99.7 | 98.1 | MEG_6551 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS | NA |
| contig00047 | 2839 | 3806 | SULI | 0/0 | 100.0 | 100.0 | MEG_6615 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI | NA |
| contig00065 | 1827 | 2642 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00062 | 643 | 1917 | TETA | 0/0 | 100.0 | 100.0 | MEG_7024 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
| contig00006 | 262232 | 263398 | UGD | 0/0 | 100.0 | 100.0 | MEG_7328 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD | NA |
| contig00006 | 56177 | 57820 | YOGI | 0/0 | 100.0 | 97.3 | MEG_7842 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00398 | 177 | 965 | aadA5_1 | 0/0 | 100.0 | 100.0 | AF137361 | aadA5 | Streptomycin |
| contig00435 | 1238 | 1771 | ant(2’’)-Ia_1 | 0/0 | 100.0 | 100.0 | X04555 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| contig00333 | 3186 | 3988 | aph(3’’)-Ib_2 | 0/0 | 99.9 | 100.0 | AF024602 | aph(3’’)-Ib | Streptomycin |
| contig00435 | 372 | 1187 | aph(3’)-Ia_7 | 0/0 | 100.0 | 100.0 | X62115 | aph(3’)-Ia | |
| contig00333 | 2350 | 3186 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00080 | 9 | 1160 | blaADC-25_1 | 0/0 | 100.0 | 99.9 | EF016355 | blaADC-25 | |
| contig00276 | 5631 | 6506 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00238 | 47 | 889 | blaOXA-420_1 | 0/0 | 100.0 | 100.0 | AB983359 | blaOXA-420 | |
| contig00282 | 5814 | 6638 | blaOXA-69_1 | 0/0 | 100.0 | 100.0 | AY859527 | blaOXA-69 | Amoxicillin, Ampicillin |
| contig00398 | 1096 | 1569 | dfrA17_1 | 0/0 | 100.0 | 100.0 | FJ460238 | dfrA17 | Trimethoprim |
| contig00470 | 160 | 669 | dfrA20_1 | 0/0 | 100.0 | 100.0 | AJ605332 | dfrA20 | Trimethoprim |
| contig00416 | 266 | 1029 | erm(B)_18 | 2/2 | 100.0 | 99.0 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig00007 | 8983 | 10215 | mdf(A)_1 | 0/0 | 100.0 | 98.1 | Y08743 | mdf(A) | |
| contig00469 | 69 | 999 | mph(A)_2 | 2/10 | 100.0 | 98.6 | U36578 | mph(A) | Erythromycin, Azithromycin, Spiramycin, Telithromycin |
| contig00238 | 5534 | 6418 | mph(E)_1 | 0/0 | 100.0 | 100.0 | DQ839391 | mph(E) | Erythromycin |
| contig00238 | 6474 | 7949 | msr(E)_1 | 0/0 | 100.0 | 100.0 | FR751518 | msr(E) | |
| contig00325 | 322 | 1188 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00328 | 277 | 1092 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00398 | 177 | 965 | aadA5 | 0/0 | 100.0 | 100.0 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| contig00006 | 105054 | 106400 | abeM | 0/0 | 100.0 | 98.9 | AB204810:186-1533 | AbeM is an multidrug efflux pump found in Acinetobacter baumannii. | acridine_dye, fluoroquinolone, triclosan |
| contig00099 | 22343 | 22672 | abeS | 0/0 | 100.0 | 100.0 | CP001172.1:1249348-1249018 | AbeS in an efflux pump of the SMR family of transporters found in Acinetobacter baumannii. | aminocoumarin, macrolide |
| contig00088 | 9931 | 11220 | Acinetobacter_baumannii_AbaF | 0/0 | 100.0 | 97.9 | CP000521.1:1558523-1557233 | Expression of abaF in E. coli resulted in increased resistance to fosfomycin. | fosfomycin |
| contig00134 | 14391 | 15695 | Acinetobacter_baumannii_AbaQ | 0/0 | 100.0 | 100.0 | CP001182.2:2256889-2255584 | AbaQ is an MFS transporter mainly involved in the extrusion of quinolone-type drugs in A. baumannii | fluoroquinolone |
| contig00087 | 15521 | 16999 | Acinetobacter_baumannii_AmvA | 0/0 | 100.0 | 100.0 | FJ911554.1:176-1655 | AmvA has 14 alpha-helical transmembrane segments qualifying it as a member of the DHA2 transporter family of the major facilitator superfamily (MFS). When AmvA was expressed in E. coli the cells had at least four-fold decreased susceptibility to erythromycin acridine orange acriflavine deoxycholate and methyl viologen. AmvA from the AC0037 strain of A. baumannii was tested. | acridine_dye, macrolide |
| contig00005 | 110504 | 113653 | acrB | 0/0 | 100.0 | 99.0 | U00096.3:484403-481253 | Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00048 | 12171 | 15284 | acrD | 0/0 | 100.0 | 98.9 | AP009048.1:2586250-2589364 | AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. | aminoglycoside |
| contig00233 | 8468 | 9625 | acrE | 0/0 | 100.0 | 98.2 | U00096:3413863-3415021 | AcrE is a membrane fusion protein similar to AcrA. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00233 | 5352 | 8456 | acrF | 0/0 | 100.0 | 97.5 | U00096:3415032-3418137 | AcrF is a inner membrane transporter similar to AcrB. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00233 | 10024 | 10686 | acrS | 0/0 | 100.0 | 97.4 | U00096:3413465-3412802 | AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. | cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00080 | 9 | 1160 | ADC-30 | 0/0 | 100.0 | 100.0 | JF265068.1:954-2106 | An ADC beta-lactamase and cephalosporinase from Acinetobacter baumannii | cephalosporin |
| contig00138 | 12149 | 13339 | adeA | 0/0 | 100.0 | 97.7 | AF370885.1:3438-4629 | AdeA is the membrane fusion protein of the multidrug efflux complex AdeABC. | glycylcycline, tetracycline |
| contig00138 | 9042 | 12149 | adeB | 0/0 | 100.0 | 97.8 | AF370885.1:4628-7736 | AdeB is the multidrug transporter of the adeABC efflux system. | glycylcycline, tetracycline |
| contig00138 | 7568 | 8965 | adeC | 0/0 | 100.0 | 95.4 | CP013924.1:2063742-2065140 | AdeC is the outer membrane factor of the AdeABC multidrug efflux complex. It can be replaced by other outer membrane channels and is not essential for antibiotic resistance. | glycylcycline, tetracycline |
| contig00099 | 13399 | 16578 | adeF | 0/0 | 100.0 | 100.0 | CT025801.2:0-3180 | AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. | fluoroquinolone, tetracycline |
| contig00099 | 16585 | 17805 | adeG | 0/0 | 100.0 | 100.0 | CT025800.2:0-1221 | AdeG is the inner membrane transporter of the AdeFGH multidrug efflux complex. | fluoroquinolone, tetracycline |
| contig00099 | 11938 | 13389 | adeH | 0/0 | 100.0 | 100.0 | CT025802.2:0-1452 | AdeH is the outer membrane channel protein of the AdeFGH multidrug efflux complex. | fluoroquinolone, tetracycline |
| contig00033 | 10169 | 11419 | adeI | 0/0 | 100.0 | 100.0 | CP001182.2:3283426-3284677 | AdeI is the membrane fusion protein of the AdeIJK multidrug efflux complex. | carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline |
| contig00033 | 11432 | 14608 | adeJ | 0/0 | 100.0 | 99.6 | AY769962:2434-5611 | AdeJ is a RND efflux protein that acts as the inner membrane transporter of the AdeIJK efflux complex. It has 57% identity with E. coli AcrB. | carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline |
| contig00033 | 14608 | 16062 | adeK | 0/0 | 100.0 | 98.7 | AY769962:5610-7065 | AdeK is the outer membrane factor protein in the adeIJK multidrug efflux complex. | carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline |
| contig00099 | 18021 | 19034 | adeL | 0/0 | 100.0 | 99.4 | KR297239.1:1428-414 | AdeL is a regulator of AdeFGH in Acinetobacter baumannii. AdeL mutations are associated with AdeFGH overexpression and multidrug resistance. | fluoroquinolone, tetracycline |
| contig00171 | 4051 | 4704 | adeN | 0/0 | 100.0 | 98.0 | KF147862:0-654 | AdeN is a repressor of AdeIJK a RND-type efflux pump in Acinetobacter baumannii. Its inactivation increases expression of AdeJ. | carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline |
| contig00138 | 13485 | 14228 | adeR | 0/0 | 100.0 | 100.0 | HM440348:0-744 | AdeR is a positive regulator of AdeABC efflux system. AdeR inactivation leads to susceptibility to aminoglycoside antibiotics. | glycylcycline, tetracycline |
| contig00138 | 14260 | 15345 | adeS | 0/0 | 100.0 | 99.7 | HM440348:775-1861 | AdeS is a sensor kinase in the AdeRS regulatory system of AdeABC. It is essential for AdeABC expression. | glycylcycline, tetracycline |
| contig00435 | 1238 | 1771 | ANT(2’’)-Ia | 0/0 | 100.0 | 100.0 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| contig00333 | 3186 | 3989 | APH(3’’)-Ib | 0/0 | 100.0 | 99.9 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00435 | 372 | 1187 | APH(3’)-Ia | 0/0 | 100.0 | 100.0 | BX664015.1:103833-103017 | APH(3’)-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3’)-Ic an aminoglycoside phosphotransferase encoded by plasmids transposons and genomic islands in K. pneumoniae A. baumannii S. marcescens Corynebacterium spp. Photobacterium spp. and Citrobacter spp. | aminoglycoside |
| contig00333 | 2350 | 3186 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00008 | 77808 | 78627 | bacA | 0/0 | 99.8 | 96.7 | U00096.3:3204131-3203309 | The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. | peptide |
| contig00071 | 10889 | 11610 | baeR | 0/0 | 99.9 | 96.7 | AP009048.1:2166412-2167135 | BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. | aminocoumarin, aminoglycoside |
| contig00071 | 9489 | 10892 | baeS | 0/0 | 100.0 | 97.1 | AP009048:2165012-2166416 | BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. | aminocoumarin, aminoglycoside |
| contig00004 | 63975 | 65348 | cpxA | 0/0 | 100.0 | 97.9 | BA000007.3:4905062-4903688 | CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. | aminocoumarin, aminoglycoside |
| contig00066 | 12447 | 13079 | CRP | 0/0 | 100.0 | 99.0 | AP009048.1:4154296-4153663 | CRP is a global regulator that represses MdtEF multidrug efflux pump expression. | fluoroquinolone, macrolide, penam |
| contig00276 | 5631 | 6506 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00398 | 1096 | 1569 | dfrA17 | 0/0 | 100.0 | 100.0 | DQ838665:0-474 | dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00470 | 160 | 669 | dfrA20 | 0/0 | 100.0 | 100.0 | AJ605332:1303-1813 | dfrA20 is a plasmid-encoded dihydrofolate reductase found in Pasteurella multocida | diaminopyrimidine |
| contig00046 | 45238 | 46410 | emrA | 0/0 | 100.0 | 97.8 | AP009048:2810082-2811255 | EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. | fluoroquinolone |
| contig00046 | 46427 | 47965 | emrB | 0/0 | 100.0 | 98.4 | U00096:2812615-2814154 | emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. | fluoroquinolone |
| contig00267 | 6988 | 8043 | emrK | 0/0 | 100.0 | 97.3 | D78168:536-1592 | emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. | tetracycline |
| contig00046 | 44581 | 45111 | emrR | 0/0 | 100.0 | 99.4 | U00096.3:2810769-2811300 | EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. | fluoroquinolone |
| contig00267 | 5450 | 6988 | emrY | 0/0 | 100.0 | 97.9 | D78168:1591-3130 | emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. | tetracycline |
| contig00040 | 7505 | 9148 | eptA | 0/0 | 100.0 | 98.5 | AP009048:4340268-4338624 | PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. | peptide |
| contig00416 | 292 | 1037 | ErmB | 1/1 | 99.9 | 99.2 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig00005 | 113676 | 114869 | Escherichia_coli_acrA | 0/0 | 100.0 | 99.0 | U00096.3:485619-484425 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00001 | 48586 | 49719 | Escherichia_coli_ampC | 0/0 | 100.0 | 97.3 | U00096.3:4378944-4377810 | A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. | cephalosporin, penam |
| contig00005 | 20726 | 21883 | Escherichia_coli_ampH | 0/0 | 100.0 | 96.7 | AP012030.1:396711-395553 | AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. | cephalosporin, penam |
| contig00075 | 23736 | 24068 | Escherichia_coli_emrE | 0/0 | 100.0 | 98.8 | Z11877.1:485-818 | Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation | macrolide |
| contig00007 | 8983 | 10215 | Escherichia_coli_mdfA | 0/0 | 100.0 | 96.7 | JQ394987:0-1233 | Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. | benzalkonium_chloride, rhodamine, tetracycline |
| contig00194 | 229 | 3822 | evgS | 0/0 | 100.0 | 96.9 | U00096:2484373-2487967 | EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | fluoroquinolone, macrolide, penam, tetracycline |
| contig00036 | 47122 | 47850 | gadW | 0/0 | 100.0 | 95.9 | CP015085.1:2552440-2551711 | GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. | fluoroquinolone, macrolide, penam |
| contig00036 | 45929 | 46753 | gadX | 0/0 | 100.0 | 96.8 | AP009048.1:3974604-3975429 | GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. | fluoroquinolone, macrolide, penam |
| contig00299 | 5050 | 5463 | H-NS | 0/0 | 100.0 | 99.5 | BA000007.3:1738104-1737690 | H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. | cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline |
| contig00021 | 59393 | 60068 | kdpE | 0/0 | 99.7 | 95.9 | U00096.3:721733-721055 | kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. | aminoglycoside |
| contig00109 | 10823 | 11206 | marA | 0/0 | 100.0 | 99.5 | AP009048.1:1621287-1621671 | In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00071 | 629 | 1876 | mdtA | 0/0 | 100.0 | 97.4 | U00096:2154015-2155263 | MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. | aminocoumarin |
| contig00071 | 1876 | 4998 | mdtB | 0/0 | 100.0 | 96.7 | U00096:2155262-2158385 | MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. | aminocoumarin |
| contig00071 | 4999 | 8076 | mdtC | 0/0 | 100.0 | 96.2 | U00096:2158385-2161463 | MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. | aminocoumarin |
| contig00036 | 51351 | 52508 | mdtE | 0/0 | 100.0 | 98.2 | AP009048.1:3981183-3980025 | MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. | fluoroquinolone, macrolide, penam |
| contig00036 | 48213 | 51326 | mdtF | 0/0 | 100.0 | 98.3 | U00096:3660413-3663527 | MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. | fluoroquinolone, macrolide, penam |
| contig00068 | 27297 | 28505 | mdtH | 0/0 | 100.0 | 98.2 | U00096:1125326-1124117 | Multidrug resistance protein MdtH | fluoroquinolone |
| contig00013 | 83486 | 84697 | mdtM | 0/0 | 98.3 | 95.5 | U00096.3:4568519-4567286 | Multidrug resistance protein MdtM | acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol |
| contig00032 | 21677 | 22708 | mdtN | 0/0 | 100.0 | 97.7 | AP009048.1:4307588-4306556 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. | acridine_dye, nucleoside |
| contig00032 | 22708 | 24759 | mdtO | 0/0 | 100.0 | 97.0 | AP009048.1:4306557-4304505 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00032 | 24756 | 26222 | mdtP | 0/0 | 100.0 | 97.0 | AP009048.1:4304509-4303042 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00469 | 69 | 971 | mphA | 0/0 | 99.7 | 99.9 | D16251.1:2531-1625 | The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. | macrolide |
| contig00170 | 8510 | 8984 | mphB | 0/0 | 99.6 | 95.6 | AE005174.2:3397370-3397847 | The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. | macrolide |
| contig00238 | 5534 | 6418 | mphE | 0/0 | 100.0 | 100.0 | DQ839391.1:13757-12872 | mphE is a macrolide phosphotransferase and resistance gene identified on a plasmid pRSB105 | macrolide |
| contig00090 | 12081 | 13829 | msbA | 0/0 | 100.0 | 98.7 | U00096.3:966620-968369 | MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. | nitroimidazole |
| contig00238 | 6474 | 7949 | msrE | 0/0 | 100.0 | 100.0 | EU294228.1:21241-22717 | MsrE is an ABC-F subfamily protein expressed to Klebsiella pneumoniae that confers resistance to erythromycin and streptogramin B antibiotics. It is associated with plasmid DNA. It is also 100% identical to ABC-F type ribosomal protection protein Msr(E) which is in multiple species. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig00238 | 47 | 889 | OXA-420 | 0/0 | 100.0 | 100.0 | AB983359:2425-3268 | From the Lahey list of beta-lactamases. Not yet released. | cephalosporin, penam |
| contig00282 | 5814 | 6638 | OXA-69 | 0/0 | 100.0 | 100.0 | CU459141.1:2175316-2176141 | OXA-69 is a beta-lactamase found in A. baumannii | cephalosporin, penam |
| contig00058 | 4694 | 5662 | pmrF | 0/0 | 100.0 | 98.5 | U00096:2367070-2368039 | PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | peptide |
| contig00325 | 349 | 1188 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00328 | 277 | 1092 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00008 | 50257 | 51744 | tolC | 0/0 | 100.0 | 98.1 | FJ768952:0-1488 | TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan |
| contig00164 | 6813 | 7979 | ugd | 0/0 | 100.0 | 99.7 | U00096:2099613-2098446 | PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin | peptide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00398 | 177 | 965 | (AGly)aadA5 | 0/0 | 100.0 | 100.0 | AF137361:64-852 | (AGly)aadA5 | NA |
| contig00435 | 1238 | 1771 | (AGly)aadB | 0/0 | 100.0 | 100.0 | JQ690540:4275-4808 | (AGly)aadB | NA |
| contig00122 | 23736 | 24524 | (AGly)ant(3’’)-IIa | 0/0 | 100.0 | 98.9 | NG_054648:101-889 | (AGly)ant(3’’)-IIa | NA |
| contig00435 | 372 | 1187 | (AGly)aph(3’’)-Ia | 0/0 | 100.0 | 100.0 | FJ172370:38668-39483 | (AGly)aph(3’’)-Ia | NA |
| contig00333 | 3186 | 3989 | (AGly)strA | 0/0 | 100.0 | 100.0 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00333 | 2350 | 3186 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00001 | 48586 | 49719 | (Bla)AmpC2_Ecoli | 0/0 | 100.0 | 97.3 | CP002970:332756-333889 | (Bla)AmpC2_Ecoli | NA |
| contig00005 | 20726 | 21883 | (Bla)ampH_Ecoli | 0/0 | 100.0 | 96.7 | AP012030:395554-396711 | (Bla)ampH_Ecoli | NA |
| contig00303 | 1387 | 2406 | (Bla)BlaA1 | 0/0 | 100.0 | 99.9 | NC_010410:1803480-1804499 | (Bla)BlaA1 | NA |
| contig00255 | 258 | 1532 | (Bla)BlaA2 | 0/0 | 100.0 | 100.0 | NC_010410:2507740-2509014 | (Bla)BlaA2 | NA |
| contig00080 | 9 | 1160 | (Bla)blaADC-30 | 0/0 | 100.0 | 100.0 | JF265068:955-2106 | (Bla)blaADC-30 | NA |
| contig00276 | 5631 | 6506 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00238 | 47 | 889 | (Bla)blaOXA-58 | 0/0 | 100.0 | 99.6 | AY665723:3301-4143 | (Bla)blaOXA-58 | NA |
| contig00282 | 5814 | 6638 | (Bla)blaOXA-69 | 0/0 | 100.0 | 100.0 | AY750911:1-825 | (Bla)blaOXA-69 | NA |
| contig00094 | 30935 | 31612 | (Bla)Mbl | 0/0 | 97.4 | 100.0 | NC_010410:c1997136-1996441 | (Bla)Mbl | NA |
| contig00133 | 17530 | 19431 | (Bla)Penicillin_Binding_Protein_Ecoli | 0/0 | 100.0 | 98.4 | CP002291:664439-666340 | (Bla)Penicillin_Binding_Protein_Ecoli | NA |
| contig00120 | 12272 | 13234 | (Bla)Zn-dependent_hydrolase | 0/0 | 100.0 | 100.0 | NC_010410:882015-882977 | (Bla)Zn-dependent_hydrolase | NA |
| contig00416 | 292 | 1029 | (MLS)erm(B) | 0/0 | 100.0 | 99.6 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig00469 | 69 | 971 | (MLS)mph(A) | 0/0 | 99.7 | 99.9 | DQ445270:1626-2531 | (MLS)mph(A) | NA |
| contig00238 | 5534 | 6418 | (MLS)mph(E) | 0/0 | 100.0 | 99.9 | JF769133:8777-9661 | (MLS)mph(E) | NA |
| contig00238 | 6474 | 7949 | (MLS)msr(E) | 0/0 | 100.0 | 100.0 | JF769133:7246-8721 | (MLS)msr(E) | NA |
| contig00325 | 349 | 1188 | (Sul)sul1 | 0/0 | 100.0 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00328 | 277 | 1092 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00398 | 1096 | 1569 | (Tmt)dfrA17 | 0/0 | 100.0 | 100.0 | AB126604:98-571 | (Tmt)dfrA17 | NA |
| contig00470 | 160 | 669 | (Tmt)dfrA20 | 0/0 | 100.0 | 100.0 | AJ605332:1304-1813 | (Tmt)dfrA20 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00398 | 177 | 965 | aadA5 | 0/0 | 100 | 100.0 | NG_047357.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| contig00435 | 1238 | 1771 | ant(2’’)-Ia | 0/0 | 100 | 100.0 | NG_047387.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| contig00122 | 23736 | 24524 | ant(3’’)-IIa | 0/0 | 100 | 100.0 | NG_054646.1 | aminoglycoside nucleotidyltransferase ANT(3’’)-IIa | SPECTINOMYCIN, STREPTOMYCIN |
| contig00333 | 3186 | 4013 | aph(3’’)-Ib | 0/0 | 100 | 99.9 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00435 | 372 | 1187 | aph(3’)-Ia | 0/0 | 100 | 100.0 | NG_047431.1 | aminoglycoside O-phosphotransferase APH(3’)-Ia | KANAMYCIN |
| contig00333 | 2350 | 3186 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00080 | 9 | 1160 | blaADC-30 | 0/0 | 100 | 100.0 | NG_048652.1 | class C extended-spectrum beta-lactamase ADC-30 | CEPHALOSPORIN |
| contig00276 | 5631 | 6506 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00001 | 48586 | 49719 | blaEC-8 | 0/0 | 100 | 98.4 | NG_049086.1 | cephalosporin-hydrolyzing class C beta-lactamase EC-8 | CEPHALOSPORIN |
| contig00238 | 47 | 889 | blaOXA-420 | 0/0 | 100 | 100.0 | NG_049708.1 | OXA-58 family carbapenem-hydrolyzing class D beta-lactamase OXA-420 | CARBAPENEM |
| contig00282 | 5814 | 6638 | blaOXA-69 | 0/0 | 100 | 100.0 | NG_049809.1 | OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-69 | CARBAPENEM |
| contig00398 | 1096 | 1569 | dfrA17 | 0/0 | 100 | 99.8 | NG_047710.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | TRIMETHOPRIM |
| contig00470 | 160 | 669 | dfrA20 | 0/0 | 100 | 100.0 | NG_047714.1 | trimethoprim-resistant dihydrofolate reductase DfrA20 | TRIMETHOPRIM |
| contig00416 | 292 | 1029 | erm(B) | 0/0 | 100 | 99.9 | NG_047804.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | MACROLIDE |
| contig00469 | 69 | 999 | mph(A) | 2/10 | 100 | 98.6 | NG_047986.1 | Mph(A) family macrolide 2’-phosphotransferase | MACROLIDE |
| contig00238 | 5534 | 6418 | mph(E) | 0/0 | 100 | 100.0 | NG_064660.1 | Mph(E) family macrolide 2’-phosphotransferase | MACROLIDE |
| contig00238 | 6474 | 7949 | msr(E) | 0/0 | 100 | 100.0 | NG_048007.1 | ABC-F type ribosomal protection protein Msr(E) | MACROLIDE |
| contig00325 | 349 | 1188 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00328 | 277 | 1092 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00088 | 9931 | 11220 | ABAF | 0/0 | 100.0 | 97.9 | MEG_369 | Drugs:Fosfomycin:Fosfomycin_MFS_efflux_pump:ABAF | NA |
| contig00134 | 14391 | 15695 | ABAQ | 0/0 | 100.0 | 100.0 | MEG_370 | Drugs:Fosfomycin:Fosfomycin_MFS_efflux_pump:ABAQ | NA |
| contig00006 | 105054 | 106400 | ABEM | 0/0 | 100.0 | 98.9 | MEG_372 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:ABEM | NA |
| contig00099 | 22343 | 22672 | ABES | 0/0 | 100.0 | 100.0 | MEG_379 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:ABES | NA |
| contig00005 | 113676 | 114869 | ACRA | 0/0 | 100.0 | 99.0 | MEG_399 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA | NA |
| contig00005 | 110504 | 113653 | ACRB | 0/0 | 100.0 | 99.0 | MEG_401 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB | NA |
| contig00048 | 12171 | 15284 | ACRD | 0/0 | 100.0 | 98.9 | MEG_407 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD | NA |
| contig00233 | 8468 | 9625 | ACRE | 0/0 | 100.0 | 98.2 | MEG_408 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE | NA |
| contig00233 | 5352 | 8456 | ACRF | 0/0 | 100.0 | 97.5 | MEG_409 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF | NA |
| contig00233 | 10024 | 10686 | ACRS | 0/0 | 100.0 | 97.4 | MEG_415 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS | NA |
| contig00080 | 9 | 1160 | ADC | 0/0 | 100.0 | 100.0 | MEG_658 | Drugs:betalactams:Class_C_betalactamases:ADC | NA |
| contig00138 | 12149 | 13339 | ADEA | 0/0 | 100.0 | 97.7 | MEG_677 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEA | NA |
| contig00138 | 9042 | 12149 | ADEB | 0/0 | 100.0 | 97.8 | MEG_678 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEB | NA |
| contig00138 | 7568 | 8965 | ADEC | 0/0 | 100.0 | 95.4 | MEG_679 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEC | NA |
| contig00099 | 16585 | 17805 | ADEF | 0/0 | 100.0 | 100.0 | MEG_683 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEF | NA |
| contig00099 | 13399 | 16578 | ADEG | 0/0 | 100.0 | 100.0 | MEG_684 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEG | NA |
| contig00099 | 11938 | 13389 | ADEH | 0/0 | 100.0 | 100.0 | MEG_685 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEH | NA |
| contig00033 | 10169 | 11419 | ADEI | 0/0 | 100.0 | 100.0 | MEG_686 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEI | NA |
| contig00033 | 11432 | 14608 | ADEJ | 0/0 | 100.0 | 99.6 | MEG_692 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEJ | NA |
| contig00033 | 14608 | 16062 | ADEK | 0/0 | 100.0 | 99.0 | MEG_696 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEK | NA |
| contig00099 | 18021 | 19034 | ADEL | 0/0 | 100.0 | 99.5 | MEG_699 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ADEL | NA |
| contig00171 | 4051 | 4704 | ADEN | 0/0 | 100.0 | 100.0 | MEG_701 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ADEN | NA |
| contig00138 | 13485 | 14228 | ADER | 0/0 | 100.0 | 100.0 | MEG_703 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ADER | NA |
| contig00138 | 14260 | 15345 | ADES | 0/0 | 100.0 | 99.7 | MEG_704 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ADES | NA |
| contig00052 | 1620 | 2336 | ADET2 | 0/0 | 100.0 | 98.9 | MEG_706 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADET2 | NA |
| contig00005 | 20726 | 21883 | AMPH | 0/0 | 100.0 | 96.7 | MEG_729 | Drugs:betalactams:Penicillin_binding_protein:AMPH | NA |
| contig00087 | 15521 | 16999 | AMVA | 0/0 | 100.0 | 100.0 | MEG_733 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:AMVA | NA |
| contig00122 | 23736 | 24524 | ANT3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_913 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00398 | 177 | 965 | ANT3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_928 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00333 | 3186 | 4013 | APH3-DPRIME | 0/0 | 100.0 | 99.9 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00435 | 372 | 1187 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1044 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00333 | 2350 | 3186 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1086 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00065 | 31194 | 33046 | ASMA | 0/0 | 100.0 | 97.9 | MEG_1180 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA | NA |
| contig00008 | 77808 | 78627 | BACA | 0/0 | 99.8 | 97.0 | MEG_1189 | Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA | NA |
| contig00071 | 10889 | 11610 | BAER | 0/0 | 99.9 | 96.7 | MEG_1192 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER | NA |
| contig00071 | 9489 | 10892 | BAES | 0/0 | 100.0 | 97.1 | MEG_1193 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES | NA |
| contig00030 | 36680 | 37870 | BCR | 0/0 | 100.0 | 95.0 | MEG_1210 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR | NA |
| contig00255 | 258 | 1532 | BLAA | 0/0 | 100.0 | 100.0 | MEG_1247 | Drugs:betalactams:Class_A_betalactamases:BLAA | NA |
| contig00303 | 1387 | 2406 | BLAA | 0/0 | 100.0 | 99.9 | MEG_1246 | Drugs:betalactams:Class_A_betalactamases:BLAA | NA |
| contig00001 | 48586 | 49719 | BLAEC | 0/0 | 100.0 | 98.4 | MEG_1278 | Drugs:betalactams:Class_C_betalactamases:BLAEC | NA |
| contig00004 | 63280 | 63978 | CPXAR | 0/0 | 100.0 | 99.4 | MEG_2122 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR | NA |
| contig00004 | 63975 | 65348 | CPXAR | 0/0 | 100.0 | 98.2 | MEG_2121 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR | NA |
| contig00066 | 12447 | 13079 | CRP | 0/0 | 100.0 | 99.0 | MEG_2132 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP | NA |
| contig00398 | 1096 | 1569 | DFRA | 0/0 | 100.0 | 100.0 | MEG_2547 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00046 | 45238 | 46410 | EMRA | 0/0 | 100.0 | 97.8 | MEG_2722 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA | NA |
| contig00046 | 46427 | 47965 | EMRB | 0/0 | 100.0 | 98.4 | MEG_2725 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB | NA |
| contig00045 | 6400 | 7590 | EMRD | 0/0 | 100.0 | 98.0 | MEG_2729 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD | NA |
| contig00267 | 6988 | 8151 | EMRK | 0/0 | 100.0 | 97.6 | MEG_2732 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK | NA |
| contig00046 | 44581 | 45111 | EMRR | 0/0 | 100.0 | 99.4 | MEG_2734 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR | NA |
| contig00267 | 5450 | 6988 | EMRY | 0/0 | 100.0 | 98.0 | MEG_2736 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY | NA |
| contig00040 | 7505 | 9148 | EPTA | 0/0 | 100.0 | 98.5 | MEG_2739 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA | NA |
| contig00416 | 266 | 1029 | ERMB | 2/2 | 100.0 | 99.0 | MEG_2801 | Drugs:MLS:23S_rRNA_methyltransferases:ERMB | NA |
| contig00194 | 229 | 3822 | EVGS | 0/0 | 100.0 | 97.5 | MEG_2869 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS | NA |
| contig00036 | 47122 | 47850 | GADW | 0/0 | 100.0 | 97.5 | MEG_3081 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW | NA |
| contig00036 | 45929 | 46753 | GADX | 0/0 | 100.0 | 96.8 | MEG_3083 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX | NA |
| contig00299 | 5050 | 5463 | HNS | 0/0 | 100.0 | 99.5 | MEG_3271 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS | NA |
| contig00021 | 59393 | 60068 | KDPE | 0/0 | 99.7 | 95.9 | MEG_3448 | Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE | NA |
| contig00109 | 10817 | 11206 | MARA | 0/0 | 100.0 | 99.5 | MEG_3662 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA | NA |
| contig00109 | 10368 | 10802 | MARR | 0/0 | 100.0 | 98.4 | MEG_3663 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR | NA |
| contig00007 | 8983 | 10215 | MDFA | 0/0 | 100.0 | 98.2 | MEG_3737 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA | NA |
| contig00071 | 629 | 1876 | MDTA | 0/0 | 100.0 | 97.4 | MEG_3746 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA | NA |
| contig00071 | 1876 | 4998 | MDTB | 0/0 | 100.0 | 96.7 | MEG_3747 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB | NA |
| contig00071 | 4999 | 8076 | MDTC | 0/0 | 100.0 | 96.2 | MEG_3749 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC | NA |
| contig00036 | 51351 | 52508 | MDTE | 0/0 | 100.0 | 98.2 | MEG_3751 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE | NA |
| contig00036 | 48213 | 51326 | MDTF | 0/0 | 100.0 | 98.3 | MEG_3752 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF | NA |
| contig00068 | 27297 | 28505 | MDTH | 0/0 | 100.0 | 98.2 | MEG_3755 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH | NA |
| contig00042 | 23506 | 23835 | MDTI | 0/0 | 100.0 | 99.7 | MEG_3756 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI | NA |
| contig00042 | 23822 | 24187 | MDTJ | 0/0 | 100.0 | 98.4 | MEG_3757 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ | NA |
| contig00022 | 33497 | 34870 | MDTK | 0/0 | 100.0 | 98.2 | MEG_3759 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK | NA |
| contig00013 | 83486 | 84697 | MDTM | 0/0 | 98.3 | 95.5 | MEG_3761 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM | NA |
| contig00032 | 21677 | 22708 | MDTN | 0/0 | 100.0 | 97.7 | MEG_3763 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN | NA |
| contig00032 | 22708 | 24759 | MDTO | 0/0 | 100.0 | 97.0 | MEG_3764 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO | NA |
| contig00032 | 24756 | 26222 | MDTP | 0/0 | 100.0 | 97.0 | MEG_3765 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP | NA |
| contig00399 | 1593 | 2582 | MEXT | 0/0 | 100.0 | 98.8 | MEG_3934 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MEXT | NA |
| contig00469 | 69 | 999 | MPHA | 2/10 | 100.0 | 98.6 | MEG_4030 | Drugs:MLS:Macrolide_phosphotransferases:MPHA | NA |
| contig00170 | 8510 | 8984 | MPHB | 0/0 | 99.6 | 95.6 | MEG_4033 | Drugs:MLS:Macrolide_phosphotransferases:MPHB | NA |
| contig00238 | 5534 | 6418 | MPHE | 0/0 | 100.0 | 100.0 | MEG_4044 | Drugs:MLS:Macrolide_phosphotransferases:MPHE | NA |
| contig00090 | 12081 | 13829 | MSBA | 0/0 | 100.0 | 98.7 | MEG_4061 | Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA | NA |
| contig00238 | 6474 | 7949 | MSRE | 0/0 | 100.0 | 100.0 | MEG_4075 | Drugs:MLS:MLS_resistance_ABC_efflux_pumps:MSRE | NA |
| contig00075 | 23736 | 24068 | MVRC | 0/0 | 100.0 | 98.8 | MEG_4103 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC | NA |
| contig00238 | 41 | 916 | OXA | 0/0 | 96.2 | 99.5 | MEG_5259 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00282 | 5732 | 6683 | OXA | 3/3 | 98.9 | 97.5 | MEG_5236 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00133 | 17530 | 19431 | PBP2 | 0/0 | 100.0 | 98.4 | MEG_5400 | Drugs:betalactams:Penicillin_binding_protein:PBP2 | NA |
| contig00058 | 4694 | 5662 | PMRF | 0/0 | 100.0 | 98.5 | MEG_5801 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF | NA |
| contig00325 | 8 | 355 | QACEDELTA1 | 0/0 | 100.0 | 100.0 | MEG_5829 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACEDELTA1 | NA |
| contig00017 | 26249 | 27118 | ROBA | 0/0 | 100.0 | 99.3 | MEG_6082 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA | NA |
| contig00032 | 48337 | 48659 | SOXS | 0/0 | 99.7 | 97.5 | MEG_6551 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS | NA |
| contig00325 | 348 | 1315 | SULI | 0/0 | 100.0 | 100.0 | MEG_6615 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI | NA |
| contig00328 | 277 | 1092 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00422 | 788 | 1204 | TETD | 0/0 | 100.0 | 100.0 | MEG_7070 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD | NA |
| contig00164 | 6813 | 7979 | UGD | 0/0 | 100.0 | 99.7 | MEG_7328 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD | NA |
## [1] "No antibiotic resistance genes from Resfinder database were found"
## [1] "No antibiotic resistance genes from CARD database were found"
## [1] "No antibiotic resistance genes from ARG-ANNOT database were found"
## [1] "No antibiotic resistance genes from NCBI database were found"
## [1] "No antibiotic resistance genes from MEGARES database were found"
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00365 | 300 | 1160 | aac(3)-IId_1 | 0/0 | 100 | 99.9 | EU022314 | aac(3)-IId | Gentamicin, Tobramycin |
| contig00381 | 117 | 920 | aph(3’’)-Ib_5 | 0/0 | 100 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00064 | 19609 | 20754 | blaACT-15_1 | 0/0 | 100 | 100.0 | JX440356 | blaACT-15 | |
| contig00323 | 187 | 1062 | blaCTX-M-15_1 | 0/0 | 100 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00262 | 5416 | 6276 | blaTEM-1A_1 | 0/0 | 100 | 100.0 | HM749966 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00420 | 163 | 645 | dfrA14_5 | 0/0 | 100 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00166 | 5357 | 5782 | fosA_7 | 0/0 | 100 | 97.2 | AEXB01000013 | fosA | Fosfomycin |
| contig00030 | 32798 | 34030 | mdf(A)_1 | 0/0 | 100 | 98.4 | Y08743 | mdf(A) | |
| contig00292 | 495 | 1139 | qnrB1_1 | 0/0 | 100 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00176 | 1415 | 2071 | qnrS1_1 | 0/0 | 100 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00381 | 981 | 1796 | sul2_2 | 0/0 | 100 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00365 | 300 | 1160 | AAC(3)-IId | 0/0 | 100.0 | 99.9 | EU022314.1:0-861 | AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00016 | 69106 | 72255 | acrB | 0/0 | 100.0 | 99.1 | U00096.3:484403-481253 | Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00005 | 106861 | 109974 | acrD | 0/0 | 100.0 | 98.8 | AP009048.1:2586250-2589364 | AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. | aminoglycoside |
| contig00003 | 286283 | 287440 | acrE | 0/0 | 100.0 | 97.8 | U00096:3413863-3415021 | AcrE is a membrane fusion protein similar to AcrA. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00003 | 287452 | 290556 | acrF | 0/0 | 100.0 | 98.1 | U00096:3415032-3418137 | AcrF is a inner membrane transporter similar to AcrB. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00003 | 285222 | 285884 | acrS | 0/0 | 100.0 | 97.3 | U00096:3413465-3412802 | AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. | cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00064 | 19609 | 20754 | ACT-15 | 0/0 | 100.0 | 100.0 | JX440356:754-1900 | ACT-15 is a beta-lactamase. From the Lahey list of ACT beta-lactamases. | carbapenem, cephalosporin, cephamycin, penam |
| contig00381 | 117 | 920 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00003 | 82065 | 82884 | bacA | 0/0 | 99.8 | 98.0 | U00096.3:3204131-3203309 | The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. | peptide |
| contig00024 | 10793 | 11514 | baeR | 0/0 | 99.9 | 97.4 | AP009048.1:2166412-2167135 | BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. | aminocoumarin, aminoglycoside |
| contig00024 | 9393 | 10796 | baeS | 0/0 | 100.0 | 91.5 | AP009048:2165012-2166416 | BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. | aminocoumarin, aminoglycoside |
| contig00010 | 73069 | 74442 | cpxA | 0/0 | 100.0 | 99.0 | BA000007.3:4905062-4903688 | CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. | aminocoumarin, aminoglycoside |
| contig00004 | 15815 | 16447 | CRP | 0/0 | 100.0 | 99.2 | AP009048.1:4154296-4153663 | CRP is a global regulator that represses MdtEF multidrug efflux pump expression. | fluoroquinolone, macrolide, penam |
| contig00323 | 187 | 1062 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00420 | 163 | 645 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00018 | 54335 | 55507 | emrA | 0/0 | 100.0 | 98.3 | AP009048:2810082-2811255 | EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. | fluoroquinolone |
| contig00018 | 55524 | 57062 | emrB | 0/0 | 100.0 | 98.2 | U00096:2812615-2814154 | emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. | fluoroquinolone |
| contig00005 | 11017 | 12072 | emrK | 0/0 | 100.0 | 99.7 | D78168:536-1592 | emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. | tetracycline |
| contig00018 | 53678 | 54208 | emrR | 0/0 | 100.0 | 99.4 | U00096.3:2810769-2811300 | EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. | fluoroquinolone |
| contig00005 | 9479 | 11017 | emrY | 0/0 | 100.0 | 98.8 | D78168:1591-3130 | emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. | tetracycline |
| contig00007 | 138679 | 140322 | eptA | 0/0 | 100.0 | 97.5 | AP009048:4340268-4338624 | PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. | peptide |
| contig00016 | 67890 | 69083 | Escherichia_coli_acrA | 0/0 | 100.0 | 99.1 | U00096.3:485619-484425 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00014 | 106966 | 108099 | Escherichia_coli_ampC | 0/0 | 100.0 | 98.2 | U00096.3:4378944-4377810 | A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. | cephalosporin, penam |
| contig00005 | 74380 | 75684 | Escherichia_coli_ampC1_beta-lactamase | 0/0 | 100.0 | 96.1 | FN649414.1:2765050-2766355 | An ampC-like beta-lactamase identified from Escherichia coli. | cephalosporin, penam |
| contig00025 | 54890 | 56047 | Escherichia_coli_ampH | 0/0 | 100.0 | 98.5 | AP012030.1:396711-395553 | AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. | cephalosporin, penam |
| contig00029 | 25315 | 25647 | Escherichia_coli_emrE | 0/0 | 100.0 | 99.4 | Z11877.1:485-818 | Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation | macrolide |
| contig00030 | 32798 | 34030 | Escherichia_coli_mdfA | 0/0 | 100.0 | 96.8 | JQ394987:0-1233 | Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. | benzalkonium_chloride, rhodamine, tetracycline |
| contig00005 | 12596 | 13210 | evgA | 0/0 | 100.0 | 99.0 | BA000007.3:3212025-3212640 | EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. | fluoroquinolone, macrolide, penam, tetracycline |
| contig00005 | 13215 | 16808 | evgS | 0/0 | 100.0 | 98.9 | U00096:2484373-2487967 | EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | fluoroquinolone, macrolide, penam, tetracycline |
| contig00166 | 5357 | 5782 | FosA2 | 0/0 | 100.0 | 92.2 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00004 | 203746 | 204474 | gadW | 0/0 | 100.0 | 96.0 | CP015085.1:2552440-2551711 | GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. | fluoroquinolone, macrolide, penam |
| contig00004 | 204843 | 205667 | gadX | 0/0 | 100.0 | 93.8 | AP009048.1:3974604-3975429 | GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. | fluoroquinolone, macrolide, penam |
| contig00109 | 1494 | 1907 | H-NS | 0/0 | 100.0 | 99.3 | BA000007.3:1738104-1737690 | H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. | cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline |
| contig00009 | 145308 | 145985 | kdpE | 0/0 | 100.0 | 96.8 | U00096.3:721733-721055 | kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. | aminoglycoside |
| contig00006 | 208653 | 209036 | marA | 0/0 | 100.0 | 99.7 | AP009048.1:1621287-1621671 | In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00024 | 533 | 1780 | mdtA | 0/0 | 100.0 | 96.2 | U00096:2154015-2155263 | MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. | aminocoumarin |
| contig00024 | 1780 | 4902 | mdtB | 0/0 | 100.0 | 96.0 | U00096:2155262-2158385 | MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. | aminocoumarin |
| contig00024 | 4903 | 7980 | mdtC | 0/0 | 100.0 | 95.6 | U00096:2158385-2161463 | MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. | aminocoumarin |
| contig00004 | 199088 | 200245 | mdtE | 0/0 | 100.0 | 98.5 | AP009048.1:3981183-3980025 | MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. | fluoroquinolone, macrolide, penam |
| contig00004 | 200270 | 203383 | mdtF | 0/0 | 100.0 | 98.0 | U00096:3660413-3663527 | MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. | fluoroquinolone, macrolide, penam |
| contig00013 | 51081 | 52307 | mdtG | 0/0 | 100.0 | 98.3 | CP000800.1:1192954-1191727 | The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. | fosfomycin |
| contig00013 | 41241 | 42449 | mdtH | 0/0 | 100.0 | 97.8 | U00096:1125326-1124117 | Multidrug resistance protein MdtH | fluoroquinolone |
| contig00001 | 294271 | 295503 | mdtM | 0/0 | 100.0 | 95.6 | U00096.3:4568519-4567286 | Multidrug resistance protein MdtM | acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol |
| contig00007 | 108402 | 109433 | mdtN | 0/0 | 100.0 | 97.8 | AP009048.1:4307588-4306556 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. | acridine_dye, nucleoside |
| contig00007 | 106351 | 108402 | mdtO | 0/0 | 100.0 | 96.9 | AP009048.1:4306557-4304505 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00007 | 104888 | 106354 | mdtP | 0/0 | 100.0 | 96.8 | AP009048.1:4304509-4303042 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00005 | 130679 | 131155 | mphB | 0/0 | 100.0 | 97.5 | AE005174.2:3397370-3397847 | The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. | macrolide |
| contig00087 | 6476 | 8224 | msbA | 0/0 | 100.0 | 98.8 | U00096.3:966620-968369 | MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. | nitroimidazole |
| contig00035 | 25964 | 26932 | pmrF | 0/0 | 100.0 | 98.0 | U00096:2367070-2368039 | PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | peptide |
| contig00292 | 459 | 1139 | QnrB17 | 0/0 | 100.0 | 99.3 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00176 | 1415 | 2071 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00381 | 981 | 1796 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00262 | 5416 | 6276 | TEM-150 | 0/0 | 100.0 | 99.9 | AM183304:208-1069 | TEM-150 is a beta-lactamase found in Enterobacter spp. E. coli and Klebsiella pneumoniae. | cephalosporin, monobactam, penam, penem |
| contig00003 | 60230 | 61717 | tolC | 0/0 | 100.0 | 98.1 | FJ768952:0-1488 | TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan |
| contig00021 | 52037 | 53203 | ugd | 0/0 | 100.0 | 96.4 | U00096:2099613-2098446 | PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin | peptide |
| contig00022 | 55292 | 56935 | yojI | 0/0 | 100.0 | 97.5 | U00096.3:2308615-2306971 | YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. | peptide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00365 | 300 | 1160 | (AGly)aac3-IId | 0/0 | 100 | 99.9 | EU022314:1-861 | (AGly)aac3-IId | NA |
| contig00381 | 117 | 920 | (AGly)strA | 0/0 | 100 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00005 | 74380 | 75684 | (Bla)AmpC1_Ecoli | 0/0 | 100 | 96.1 | FN649414:2765051-2766355 | (Bla)AmpC1_Ecoli | NA |
| contig00014 | 106966 | 108099 | (Bla)AmpC2_Ecoli | 0/0 | 100 | 98.2 | CP002970:332756-333889 | (Bla)AmpC2_Ecoli | NA |
| contig00025 | 54890 | 56047 | (Bla)ampH_Ecoli | 0/0 | 100 | 98.5 | AP012030:395554-396711 | (Bla)ampH_Ecoli | NA |
| contig00064 | 19609 | 20754 | (Bla)blaACT-15 | 0/0 | 100 | 100.0 | JX440356:755-1900 | (Bla)blaACT-15 | NA |
| contig00323 | 187 | 1062 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00262 | 5416 | 6276 | (Bla)blaTEM-150 | 0/0 | 100 | 99.9 | AM183304:209-1069 | (Bla)blaTEM-150 | NA |
| contig00012 | 45588 | 47489 | (Bla)Penicillin_Binding_Protein_Ecoli | 0/0 | 100 | 98.7 | CP002291:664439-666340 | (Bla)Penicillin_Binding_Protein_Ecoli | NA |
| contig00166 | 5357 | 5782 | (Fcyn)FosA2 | 0/0 | 100 | 92.2 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00176 | 1415 | 2071 | (Flq)qnr-S1 | 0/0 | 100 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00292 | 459 | 1139 | (Flq)qnrB1 | 0/0 | 100 | 100.0 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00381 | 981 | 1796 | (Sul)sul2 | 0/0 | 100 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00420 | 163 | 636 | (Tmt)dfrA14 | 0/0 | 100 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00365 | 300 | 1160 | aac(3)-IId | 0/0 | 100 | 100.0 | NG_047251.1 | aminoglycoside N-acetyltransferase AAC(3)-IId | GENTAMICIN |
| contig00381 | 117 | 944 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00064 | 19609 | 20754 | blaACT-15 | 0/0 | 100 | 100.0 | NG_048602.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-15 | CEPHALOSPORIN |
| contig00323 | 187 | 1062 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00014 | 106966 | 108099 | blaEC-19 | 0/0 | 100 | 99.8 | NG_049084.1 | class C extended-spectrum beta-lactamase EC-19 | CEPHALOSPORIN |
| contig00262 | 5416 | 6276 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00420 | 163 | 636 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00166 | 5357 | 5782 | fosA | 0/0 | 100 | 97.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00292 | 495 | 1139 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00176 | 1415 | 2071 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00381 | 981 | 1796 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00365 | 300 | 1160 | AAC3 | 0/0 | 100.0 | 100.0 | MEG_64 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00016 | 67890 | 69083 | ACRA | 0/0 | 100.0 | 99.1 | MEG_399 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA | NA |
| contig00016 | 69106 | 72255 | ACRB | 0/0 | 100.0 | 99.1 | MEG_401 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB | NA |
| contig00005 | 106861 | 109974 | ACRD | 0/0 | 100.0 | 98.8 | MEG_407 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD | NA |
| contig00003 | 286283 | 287440 | ACRE | 0/0 | 100.0 | 97.8 | MEG_408 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE | NA |
| contig00003 | 287452 | 290556 | ACRF | 0/0 | 100.0 | 98.1 | MEG_409 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF | NA |
| contig00003 | 285222 | 285884 | ACRS | 0/0 | 100.0 | 97.3 | MEG_415 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS | NA |
| contig00064 | 19219 | 19450 | ACT | 0/0 | 100.0 | 97.0 | MEG_497 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00064 | 19610 | 20856 | ACT | 0/0 | 100.0 | 100.0 | MEG_487 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00025 | 54890 | 56047 | AMPH | 0/0 | 100.0 | 98.5 | MEG_729 | Drugs:betalactams:Penicillin_binding_protein:AMPH | NA |
| contig00381 | 117 | 944 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00021 | 11320 | 13173 | ASMA | 0/0 | 100.0 | 97.5 | MEG_1180 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA | NA |
| contig00003 | 82065 | 82884 | BACA | 0/0 | 99.8 | 98.3 | MEG_1189 | Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA | NA |
| contig00024 | 10793 | 11514 | BAER | 0/0 | 99.9 | 97.4 | MEG_1192 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER | NA |
| contig00024 | 9393 | 10796 | BAES | 0/0 | 100.0 | 91.5 | MEG_1193 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES | NA |
| contig00022 | 28833 | 30023 | BCR | 0/0 | 100.0 | 96.6 | MEG_1210 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR | NA |
| contig00014 | 106966 | 108099 | BLAEC | 0/0 | 100.0 | 99.8 | MEG_1277 | Drugs:betalactams:Class_C_betalactamases:BLAEC | NA |
| contig00010 | 72374 | 73072 | CPXAR | 0/0 | 100.0 | 98.6 | MEG_2118 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR | NA |
| contig00010 | 73069 | 74442 | CPXAR | 0/0 | 100.0 | 99.0 | MEG_2119 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR | NA |
| contig00004 | 15815 | 16447 | CRP | 0/0 | 100.0 | 99.2 | MEG_2132 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP | NA |
| contig00420 | 163 | 636 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2517 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00018 | 54335 | 55507 | EMRA | 0/0 | 100.0 | 98.3 | MEG_2722 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA | NA |
| contig00018 | 55524 | 57062 | EMRB | 0/0 | 100.0 | 98.2 | MEG_2725 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB | NA |
| contig00099 | 21787 | 22977 | EMRD | 0/0 | 100.0 | 98.2 | MEG_2729 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD | NA |
| contig00005 | 11017 | 12180 | EMRK | 0/0 | 100.0 | 99.7 | MEG_2732 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK | NA |
| contig00018 | 53678 | 54208 | EMRR | 0/0 | 100.0 | 99.4 | MEG_2734 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR | NA |
| contig00005 | 9479 | 11017 | EMRY | 0/0 | 100.0 | 98.8 | MEG_2736 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY | NA |
| contig00007 | 138679 | 140322 | EPTA | 0/0 | 100.0 | 97.5 | MEG_2739 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA | NA |
| contig00005 | 13215 | 16808 | EVGS | 0/0 | 100.0 | 98.9 | MEG_2870 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS | NA |
| contig00166 | 5357 | 5936 | FOSA | 0/0 | 99.7 | 92.8 | MEG_2990 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00004 | 203746 | 204474 | GADW | 0/0 | 100.0 | 97.4 | MEG_3081 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW | NA |
| contig00004 | 204843 | 205667 | GADX | 0/0 | 100.0 | 93.8 | MEG_3083 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX | NA |
| contig00109 | 1494 | 1907 | HNS | 0/0 | 100.0 | 99.3 | MEG_3271 | Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS | NA |
| contig00009 | 145308 | 145985 | KDPE | 0/0 | 100.0 | 96.8 | MEG_3448 | Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE | NA |
| contig00006 | 208653 | 209042 | MARA | 0/0 | 100.0 | 99.7 | MEG_3662 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA | NA |
| contig00006 | 209057 | 209491 | MARR | 0/0 | 100.0 | 97.9 | MEG_3663 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR | NA |
| contig00030 | 32798 | 34030 | MDFA | 0/0 | 100.0 | 98.5 | MEG_3737 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA | NA |
| contig00024 | 533 | 1780 | MDTA | 0/0 | 100.0 | 96.2 | MEG_3746 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA | NA |
| contig00024 | 1780 | 4902 | MDTB | 0/0 | 100.0 | 96.0 | MEG_3747 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB | NA |
| contig00024 | 4903 | 7980 | MDTC | 0/0 | 100.0 | 95.6 | MEG_3749 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC | NA |
| contig00004 | 199088 | 200245 | MDTE | 0/0 | 100.0 | 98.5 | MEG_3751 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE | NA |
| contig00004 | 200270 | 203383 | MDTF | 0/0 | 100.0 | 98.0 | MEG_3752 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF | NA |
| contig00013 | 51081 | 52307 | MDTG | 0/0 | 100.0 | 98.4 | MEG_3753 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG | NA |
| contig00013 | 41241 | 42449 | MDTH | 0/0 | 100.0 | 97.8 | MEG_3755 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH | NA |
| contig00006 | 168680 | 169009 | MDTI | 0/0 | 100.0 | 99.4 | MEG_3756 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI | NA |
| contig00006 | 168328 | 168693 | MDTJ | 0/0 | 100.0 | 97.8 | MEG_3757 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ | NA |
| contig00006 | 97182 | 98554 | MDTK | 0/0 | 99.9 | 97.8 | MEG_3759 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK | NA |
| contig00001 | 294271 | 295503 | MDTM | 0/0 | 100.0 | 95.6 | MEG_3761 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM | NA |
| contig00007 | 108402 | 109433 | MDTN | 0/0 | 100.0 | 97.8 | MEG_3763 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN | NA |
| contig00007 | 106351 | 108402 | MDTO | 0/0 | 100.0 | 96.9 | MEG_3764 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO | NA |
| contig00007 | 104888 | 106354 | MDTP | 0/0 | 100.0 | 96.8 | MEG_3765 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP | NA |
| contig00005 | 130679 | 131155 | MPHB | 0/0 | 100.0 | 97.5 | MEG_4033 | Drugs:MLS:Macrolide_phosphotransferases:MPHB | NA |
| contig00087 | 6476 | 8224 | MSBA | 0/0 | 100.0 | 98.8 | MEG_4061 | Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA | NA |
| contig00029 | 25315 | 25647 | MVRC | 0/0 | 100.0 | 99.4 | MEG_4103 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC | NA |
| contig00012 | 45588 | 47489 | PBP2 | 0/0 | 100.0 | 98.7 | MEG_5400 | Drugs:betalactams:Penicillin_binding_protein:PBP2 | NA |
| contig00005 | 74380 | 75684 | PBP4B | 0/0 | 100.0 | 96.1 | MEG_5409 | Drugs:betalactams:Penicillin_binding_protein:PBP4B | NA |
| contig00035 | 25964 | 26932 | PMRF | 0/0 | 100.0 | 98.0 | MEG_5801 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF | NA |
| contig00292 | 459 | 1139 | QNRB | 0/0 | 100.0 | 99.3 | MEG_5928 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB | NA |
| contig00176 | 1415 | 2071 | QNRS | 0/0 | 100.0 | 100.0 | MEG_6020 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS | NA |
| contig00001 | 234685 | 235554 | ROBA | 0/0 | 100.0 | 98.3 | MEG_6082 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA | NA |
| contig00007 | 84489 | 84811 | SOXS | 0/0 | 99.7 | 97.5 | MEG_6551 | Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS | NA |
| contig00381 | 981 | 1796 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00262 | 5398 | 6643 | TEM | 0/0 | 98.3 | 99.5 | MEG_6875 | Drugs:betalactams:Class_A_betalactamases:TEM | NA |
| contig00021 | 52037 | 53203 | UGD | 0/0 | 100.0 | 96.4 | MEG_7328 | Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD | NA |
| contig00022 | 55292 | 56935 | YOGI | 0/0 | 100.0 | 97.5 | MEG_7842 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00092 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00095 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00105 | 126 | 1090 | ant(3’’)-Ia_1 | 3/7 | 99.3 | 99.1 | X02340 | ant(3’’)-Ia | Streptomycin |
| contig00059 | 8750 | 9553 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00059 | 7914 | 8750 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00010 | 116113 | 117258 | blaACT-5_1 | 0/0 | 100.0 | 99.2 | FJ237369 | blaACT-5 | |
| contig00059 | 2636 | 3511 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00095 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00059 | 6333 | 7193 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00098 | 916 | 1570 | catA1_1 | 0/0 | 99.2 | 99.8 | V00622 | catA1 | Chloramphenicol |
| contig00070 | 5401 | 5883 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00039 | 17872 | 18297 | fosA_1 | 0/0 | 100.0 | 97.2 | M85195 | fosA | Fosfomycin |
| contig00075 | 4404 | 5048 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00059 | 9614 | 10429 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00081 | 1429 | 2697 | tet(A)_6 | 1/22 | 97.8 | 93.2 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00092 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00095 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00010 | 116113 | 117258 | ACT-23 | 0/0 | 100.0 | 99.3 | KF515536:0-1146 | ACT-23 is a beta-lactamase found in Escherichia coli | carbapenem, cephalosporin, cephamycin, penam |
| contig00105 | 126 | 1090 | ANT(3’’)-IIa | 3/7 | 99.3 | 99.1 | X02340.1:222-1194 | ANT(3’’)-IIa is a aminoglycoside nucleotidyltransferase identified in Acinetobacter spp. via horizontal gene transfer mechanisms. | aminoglycoside |
| contig00059 | 8750 | 9553 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00059 | 7914 | 8750 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00098 | 916 | 1570 | catI | 0/0 | 99.2 | 99.8 | V00622:243-903 | catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii | phenicol |
| contig00059 | 2636 | 3511 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00070 | 5401 | 5883 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00039 | 17872 | 18297 | FosA2 | 0/0 | 100.0 | 92.2 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00095 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00075 | 4367 | 5048 | QnrB17 | 1/1 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00059 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00059 | 6333 | 7193 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00081 | 1429 | 2697 | tet(A) | 1/22 | 97.8 | 93.2 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00092 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00105 | 126 | 937 | (AGly)aadA1-pm | 0/0 | 97.7 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00059 | 8750 | 9553 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00059 | 7914 | 8750 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00010 | 116113 | 117258 | (Bla)blaACT-5 | 0/0 | 100.0 | 99.2 | FJ237369:1-1146 | (Bla)blaACT-5 | NA |
| contig00059 | 2636 | 3511 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00095 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00059 | 6333 | 7193 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00039 | 17872 | 18297 | (Fcyn)FosA2 | 0/0 | 100.0 | 92.2 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00075 | 4367 | 5048 | (Flq)qnrB1 | 1/1 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00098 | 916 | 1570 | (Phe)catA1 | 0/0 | 99.2 | 99.8 | V00622:244-903 | (Phe)catA1 | NA |
| contig00059 | 9614 | 10429 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00081 | 1429 | 2725 | (Tet)tetA | 1/22 | 100.0 | 93.3 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00081 | 757 | 1398 | (Tet)tetR | 1/9 | 98.6 | 93.1 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00070 | 5401 | 5874 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00092 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00095 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00105 | 126 | 917 | aadA1 | 0/0 | 100.0 | 100.0 | NG_052536.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00059 | 8750 | 9577 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00059 | 7914 | 8750 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00010 | 116113 | 117258 | blaACT-23 | 0/0 | 100.0 | 99.3 | NG_048610.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-23 | CEPHALOSPORIN |
| contig00059 | 2636 | 3511 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00095 | 578 | 1408 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00059 | 6333 | 7193 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00098 | 916 | 1570 | catA1 | 0/0 | 99.2 | 99.8 | NG_047582.1 | type A-1 chloramphenicol O-acetyltransferase | CHLORAMPHENICOL |
| contig00070 | 5401 | 5874 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00039 | 17872 | 18297 | fosA | 0/0 | 100.0 | 97.2 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00075 | 4404 | 5048 | qnrB1 | 0/0 | 100.0 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00059 | 9614 | 10429 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00081 | 1526 | 2725 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048157.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00092 | 1696 | 2556 | AAC3 | 0/0 | 100.0 | 99.8 | MEG_44 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00010 | 116011 | 117258 | ACT | 0/0 | 100.0 | 99.4 | MEG_489 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00010 | 117416 | 117647 | ACT | 0/0 | 100.0 | 95.3 | MEG_497 | Drugs:betalactams:Class_C_betalactamases:ACT | NA |
| contig00105 | 126 | 1090 | ANT3-DPRIME | 3/7 | 99.3 | 99.1 | MEG_949 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00059 | 8750 | 9577 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00059 | 7914 | 8750 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1086 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00098 | 905 | 1570 | CATA | 0/0 | 99.2 | 100.0 | MEG_1593 | Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA | NA |
| contig00070 | 5401 | 5874 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2517 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00039 | 17872 | 18452 | FOSA | 1/1 | 99.8 | 92.6 | MEG_2990 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00095 | 578 | 1408 | OXA | 0/0 | 100.0 | 100.0 | MEG_4980 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00075 | 4367 | 5048 | QNRB | 1/1 | 100.0 | 99.1 | MEG_5928 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB | NA |
| contig00059 | 9614 | 10429 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00059 | 5966 | 7211 | TEM | 0/0 | 98.3 | 99.4 | MEG_6875 | Drugs:betalactams:Class_A_betalactamases:TEM | NA |
| contig00081 | 1526 | 2725 | TETA | 0/0 | 100.0 | 100.0 | MEG_7021 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00434 | 1130 | 2569 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100.0 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig00010 | 27219 | 28106 | blaZ_133 | 0/0 | 100 | 99.3 | AIDT01000014 | blaZ | Amoxicillin, Ampicillin, Penicillin, Piperacillin |
| contig00029 | 1548 | 2045 | dfrG_1 | 0/0 | 100 | 100.0 | AB205645 | dfrG | Trimethoprim |
| contig00470 | 1331 | 2065 | erm(C)_13 | 0/0 | 100 | 100.0 | M13761 | erm(C) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig00147 | 2834 | 4840 | mecA_8 | 0/0 | 100 | 100.0 | NC_007168 | mecA | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam |
| contig00274 | 138 | 1517 | tet(K)_1 | 0/0 | 100 | 99.6 | U38656 | tet(K) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00434 | 1130 | 2569 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100.0 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig00048 | 11640 | 12299 | arlR | 0/0 | 100 | 100.0 | CP023390.1:1462248-1461588 | ArlR is a response regulator that binds to the norA promoter to activate expression. ArlR must first be phosphorylated by ArlS. | acridine_dye, fluoroquinolone |
| contig00700 | 634 | 1293 | arlR | 0/0 | 100 | 97.9 | CP023390.1:1462248-1461588 | ArlR is a response regulator that binds to the norA promoter to activate expression. ArlR must first be phosphorylated by ArlS. | acridine_dye, fluoroquinolone |
| contig00048 | 12296 | 13651 | arlS | 0/0 | 100 | 100.0 | CP000253.1:1361636-1360280 | ArlS is a protein histidine kinase that phosphorylates ArlR a promoter for norA expression. | acridine_dye, fluoroquinolone |
| contig00492 | 1044 | 1529 | dfrC | 0/0 | 100 | 99.0 | AE015929.1:1129419-1128933 | dfrC is a chromosome-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig00029 | 1548 | 2045 | dfrG | 0/0 | 100 | 100.0 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig00470 | 1331 | 2065 | ErmC | 0/0 | 100 | 99.9 | M12730:779-1514 | ErmC is a methyltransferase that catalyzes the methylation of A2058 of the 23S ribosomal RNA in two steps. Expression of ErmC is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmC. | lincosamide, macrolide, streptogramin |
| contig00147 | 2834 | 4840 | mecA | 0/0 | 100 | 99.8 | KC243783:0-2007 | A foreign PBP2a acquired by lateral gene transfer that able to perform peptidoglycan synthesis in the presence of beta-lactams. | penam |
| contig00011 | 26010 | 27365 | mepA | 0/0 | 100 | 100.0 | AY661734.1:839-2195 | MepA is an efflux protein regulated by MepR and part of the MepRAB cluster. Its presence in Staphylococcus aureus led to multidrug resistance while it has also been shown to decrease tigecycline susceptibility. | glycylcycline, tetracycline |
| contig00184 | 4254 | 5609 | mepA | 0/0 | 100 | 97.6 | AY661734.1:839-2195 | MepA is an efflux protein regulated by MepR and part of the MepRAB cluster. Its presence in Staphylococcus aureus led to multidrug resistance while it has also been shown to decrease tigecycline susceptibility. | glycylcycline, tetracycline |
| contig00011 | 25484 | 25903 | mepR | 0/0 | 100 | 99.3 | BA000017.4:379931-380351 | MepR is an upstream repressor of MepA in Staphylococcus aureus. It is part of the mepRAB operon. | glycylcycline, tetracycline |
| contig00184 | 3728 | 4147 | mepR | 0/0 | 100 | 99.3 | BA000017.4:379931-380351 | MepR is an upstream repressor of MepA in Staphylococcus aureus. It is part of the mepRAB operon. | glycylcycline, tetracycline |
| contig00199 | 155 | 3229 | mupA | 2/2 | 100 | 99.8 | X75439:476-3551 | An alternative isoleucyl-tRNA synthetase conferring resistance to mupirocin. | mupirocin |
| contig00010 | 27219 | 28064 | PC1_beta-lactamase_(blaZ) | 0/0 | 100 | 96.9 | CP000732.1:10528-9682 | The blaZ beta-lactamase is found in Bacillus subtilis and Staphylococcus aureus. | penam |
| contig00096 | 8842 | 9261 | Staphylococcus_aureus_FosB | 0/0 | 100 | 99.3 | AHLO01000073.1:63138-63558 | The Bacillus subtilis fosB gene encodes a fosfomycin resistance protein | fosfomycin |
| contig00186 | 3062 | 4228 | Staphylococcus_aureus_norA | 0/0 | 100 | 99.9 | D90119.1:477-1644 | NorA gene cloned from Staphylococcus aureus conferred relatively high resistance to hydrophilic quinolones such as norfloxacin enoxacin ofloxacin and ciprofloxacin in S. aureus and Escherichia coli. Had low or no resistance at all to hydrophobic ones such as nalidixic acid oxolinic acid and sparfloxacin in S. aureus and Escherichia coli. | fluoroquinolone |
| contig00052 | 11470 | 12912 | Staphylococcys_aureus_LmrS | 0/0 | 100 | 100.0 | CP000046.1:2236817-2235374 | MFS transporters are secondary active transporters with single-polypeptide chains containing 400-600 amino acids that transport small solutes across the membrane by using electrochemical gradients. LmrS has 14 transmembrane helices and when expressed in E. coli is capable of extruding a variety of antibiotics inclinding linezolid trimethoprim florfenicol chlorampheniocol erythromycin streptomycin kanamycin and fusidic acid | aminoglycoside, diaminopyrimidine, macrolide, oxazolidinone, phenicol |
| contig00310 | 1552 | 2994 | Staphylococcys_aureus_LmrS | 0/0 | 100 | 95.6 | CP000046.1:2236817-2235374 | MFS transporters are secondary active transporters with single-polypeptide chains containing 400-600 amino acids that transport small solutes across the membrane by using electrochemical gradients. LmrS has 14 transmembrane helices and when expressed in E. coli is capable of extruding a variety of antibiotics inclinding linezolid trimethoprim florfenicol chlorampheniocol erythromycin streptomycin kanamycin and fusidic acid | aminoglycoside, diaminopyrimidine, macrolide, oxazolidinone, phenicol |
| contig00007 | 25352 | 26704 | tet(38) | 0/0 | 100 | 99.8 | AY825285:0-1353 | Tet38 is a tetracycline efflux pump found in the Gram-positive Staphylococcus aureus. It is regulated by mgrA which also regulates NorB. | tetracycline |
| contig00629 | 269 | 1621 | tet(38) | 0/0 | 100 | 97.6 | AY825285:0-1353 | Tet38 is a tetracycline efflux pump found in the Gram-positive Staphylococcus aureus. It is regulated by mgrA which also regulates NorB. | tetracycline |
| contig00274 | 138 | 1517 | tet(K) | 0/0 | 100 | 99.6 | S67449.1:0-1380 | TetK is a tetracycline efflux protein found in both Gram-negative (Haemophilus and Gallibacterium) and Gram-positive (many species including mycobacteria) bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00434 | 1130 | 2569 | (AGly)aac6-Aph2 | 0/0 | 100 | 100.0 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig00026 | 19507 | 20307 | (AGly)apH-Stph | 0/0 | 100 | 100.0 | HE579073:1778413-1779213 | (AGly)apH-Stph | NA |
| contig00275 | 1321 | 2121 | (AGly)apH-Stph | 0/0 | 100 | 98.6 | HE579073:1778413-1779213 | (AGly)apH-Stph | NA |
| contig00010 | 29918 | 30298 | (Bla)blaI | 0/0 | 100 | 95.5 | NG_047499:101-481 | (Bla)blaI | NA |
| contig00010 | 28171 | 29928 | (Bla)blaR1_Bacilli | 0/0 | 100 | 93.0 | NG_047539:1-1758 | (Bla)blaR1_Bacilli | NA |
| contig00010 | 27219 | 28064 | (Bla)blaZ | 0/0 | 100 | 94.8 | AB245469:2235-3080 | (Bla)blaZ | NA |
| contig00147 | 2834 | 4840 | (Bla)mecA | 0/0 | 100 | 99.9 | AB221124:91-2097 | (Bla)mecA | NA |
| contig00096 | 8842 | 9261 | (Fcyn)FosB | 0/0 | 100 | 99.3 | AHLO01000073:63139-63558 | (Fcyn)FosB | NA |
| contig00186 | 3062 | 4228 | (Flq)norA | 0/0 | 100 | 99.9 | D90119:478-1644 | (Flq)norA | NA |
| contig00470 | 1331 | 2065 | (MLS)erm(C) | 0/0 | 100 | 99.6 | M19652:988-1722 | (MLS)erm(C) | NA |
| contig00007 | 25352 | 26704 | (Tet)tet(38) | 0/0 | 100 | 99.8 | AY825285:1-1353 | (Tet)tet(38) | NA |
| contig00629 | 269 | 1621 | (Tet)tet(38) | 0/0 | 100 | 97.6 | AY825285:1-1353 | (Tet)tet(38) | NA |
| contig00274 | 138 | 1517 | (Tet)tetK | 0/0 | 100 | 99.6 | M16217:305-1684 | (Tet)tetK | NA |
| contig00492 | 1044 | 1529 | (Tmt)dfrC | 0/0 | 100 | 99.0 | Z48233:337-822 | (Tmt)dfrC | NA |
| contig00029 | 1548 | 2045 | (Tmt)dfrG | 0/0 | 100 | 100.0 | AB205645:1013-1510 | (Tmt)dfrG | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00010 | 29918 | 30298 | blaI_of_Z | 0/0 | 100 | 95.5 | NG_047499.1 | penicillinase repressor BlaI | BETA-LACTAM |
| contig00010 | 28171 | 29928 | blaR1 | 0/0 | 100 | 93.0 | NG_047539.1 | beta-lactam sensor/signal transducer BlaR1 | BETA-LACTAM |
| contig00010 | 27219 | 28064 | blaZ | 0/0 | 100 | 96.9 | NG_055999.1 | penicillin-hydrolyzing class A beta-lactamase BlaZ | BETA-LACTAM |
| contig00492 | 1044 | 1529 | dfrC | 0/0 | 100 | 99.0 | NG_047752.1 | trimethoprim-resistant dihydrofolate reductase DfrC | TRIMETHOPRIM |
| contig00029 | 1548 | 2045 | dfrG | 0/0 | 100 | 100.0 | NG_047756.1 | trimethoprim-resistant dihydrofolate reductase DfrG | TRIMETHOPRIM |
| contig00470 | 1331 | 2065 | erm(C) | 0/0 | 100 | 100.0 | NG_047806.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) | MACROLIDE |
| contig00096 | 8842 | 9261 | fosB-Saur | 0/0 | 100 | 99.3 | NG_065844.1 | FosB1/FosB3 family fosfomycin resistance bacillithiol transferase | FOSFOMYCIN |
| contig00147 | 2834 | 4840 | mecA | 0/0 | 100 | 100.0 | NG_047939.1 | PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA | METHICILLIN |
| contig00199 | 155 | 3229 | mupA | 0/0 | 100 | 99.9 | NG_048008.1 | mupirocin-resistant isoleucine–tRNA ligase MupA | MUPIROCIN |
| contig00007 | 25352 | 26704 | tet(38) | 0/0 | 100 | 100.0 | NG_048134.1 | tetracycline efflux MFS transporter Tet(38) | TETRACYCLINE |
| contig00629 | 269 | 1621 | tet(38) | 0/0 | 100 | 98.4 | NG_048136.1 | tetracycline efflux MFS transporter Tet(38) | TETRACYCLINE |
| contig00274 | 138 | 1517 | tet(K) | 0/0 | 100 | 99.6 | NG_048200.1 | tetracycline efflux MFS transporter Tet(K) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00361 | 1978 | 2421 | AAC3 | 0/0 | 100.0 | 98.9 | MEG_47 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00434 | 1128 | 2572 | AAC6-PRIME | 0/0 | 100.0 | 100.0 | MEG_364 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC6-PRIME | NA |
| contig00026 | 19507 | 20307 | APH3-PRIME | 0/0 | 100.0 | 100.0 | MEG_1060 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-PRIME | NA |
| contig00275 | 1321 | 2121 | APH3-PRIME | 0/0 | 100.0 | 98.6 | MEG_1060 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-PRIME | NA |
| contig00048 | 11640 | 12299 | ARLR | 0/0 | 100.0 | 100.0 | MEG_1117 | Drugs:Multi-drug_resistance:MDR_regulator:ARLR | NA |
| contig00700 | 634 | 1293 | ARLR | 0/0 | 100.0 | 98.2 | MEG_1114 | Drugs:Multi-drug_resistance:MDR_regulator:ARLR | NA |
| contig00048 | 12296 | 13651 | ARLS | 0/0 | 100.0 | 100.0 | MEG_1118 | Drugs:Multi-drug_resistance:MDR_regulator:ARLS | NA |
| contig00010 | 29918 | 30298 | BLAI | 0/0 | 100.0 | 95.5 | MEG_1287 | Drugs:betalactams:Penicillin_binding_protein_regulator:BLAI | NA |
| contig00010 | 28171 | 29928 | BLAR | 0/0 | 100.0 | 93.0 | MEG_1302 | Drugs:betalactams:Penicillin_binding_protein_regulator:BLAR | NA |
| contig00010 | 27219 | 28106 | BLAZ | 0/0 | 100.0 | 99.3 | MEG_1407 | Drugs:betalactams:Class_A_betalactamases:BLAZ | NA |
| contig00029 | 1548 | 2045 | DFRG | 0/0 | 100.0 | 100.0 | MEG_2579 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRG | NA |
| contig00470 | 1331 | 2065 | ERMC | 0/0 | 100.0 | 100.0 | MEG_2822 | Drugs:MLS:23S_rRNA_methyltransferases:ERMC | NA |
| contig00096 | 8842 | 9261 | FOSB | 0/0 | 100.0 | 99.3 | MEG_3009 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSB | NA |
| contig00052 | 11470 | 12912 | LMRS | 0/0 | 100.0 | 100.0 | MEG_3599 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:LMRS | NA |
| contig00310 | 1552 | 2994 | LMRS | 0/0 | 100.0 | 95.6 | MEG_3599 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:LMRS | NA |
| contig00147 | 2834 | 4843 | MECA | 0/0 | 100.0 | 100.0 | MEG_3783 | Drugs:betalactams:Penicillin_binding_protein:MECA | NA |
| contig00011 | 25995 | 27365 | MEPA | 0/0 | 100.0 | 100.0 | MEG_3834 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MEPA | NA |
| contig00184 | 4239 | 5609 | MEPA | 0/0 | 100.0 | 97.5 | MEG_3834 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MEPA | NA |
| contig00011 | 27469 | 27909 | MEPB | 0/0 | 100.0 | 100.0 | MEG_3835 | Drugs:Multi-drug_resistance:Multi-drug_MATE_efflux_pump:MEPB | NA |
| contig00011 | 25484 | 25903 | MEPR | 0/0 | 100.0 | 99.3 | MEG_3836 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_regulator:MEPR | NA |
| contig00184 | 3728 | 4147 | MEPR | 0/0 | 100.0 | 99.3 | MEG_3836 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_regulator:MEPR | NA |
| contig00199 | 155 | 3229 | MUPA | 0/0 | 100.0 | 99.9 | MEG_4089 | Drugs:Mupirocin:Mupirocin-resistant_isoleucyl-tRNA_synthetase:MUPA | NA |
| contig00186 | 3062 | 4228 | NORA | 0/0 | 100.0 | 99.9 | MEG_4207 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:NORA | NA |
| contig00008 | 2671 | 4062 | NORB | 0/0 | 100.0 | 99.3 | MEG_4210 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:NORB | NA |
| contig00338 | 536 | 859 | QACC | 0/0 | 100.0 | 99.7 | MEG_5826 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACC | NA |
| contig00024 | 12726 | 13203 | RLMH | 0/0 | 99.6 | 99.6 | MEG_6058 | Drugs:MLS:23S_rRNA_methyltransferases:RLMH | NA |
| contig00007 | 25352 | 26704 | TET38 | 0/0 | 100.0 | 100.0 | MEG_6982 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TET38 | NA |
| contig00629 | 269 | 1621 | TET38 | 0/0 | 100.0 | 98.4 | MEG_6985 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TET38 | NA |
| contig00274 | 138 | 1517 | TETK | 0/0 | 100.0 | 99.6 | MEG_7090 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETK | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00131 | 1695 | 2555 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00104 | 1309 | 2169 | aac(3)-IId_1 | 0/0 | 100.0 | 99.9 | EU022314 | aac(3)-IId | Gentamicin, Tobramycin |
| contig00136 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00156 | 126 | 1090 | ant(3’’)-Ia_1 | 3/7 | 99.3 | 99.1 | X02340 | ant(3’’)-Ia | Streptomycin |
| contig00118 | 1406 | 2209 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00118 | 570 | 1406 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00123 | 1704 | 2579 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00136 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00079 | 4012 | 4872 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00158 | 350 | 1004 | catA1_1 | 0/0 | 99.2 | 99.8 | V00622 | catA1 | Chloramphenicol |
| contig00114 | 3115 | 3597 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00023 | 5385 | 5810 | fosA_7 | 0/0 | 100.0 | 96.2 | AEXB01000013 | fosA | Fosfomycin |
| contig00151 | 68 | 989 | mph(A)_2 | 1/1 | 100.0 | 99.7 | U36578 | mph(A) | Erythromycin, Azithromycin, Spiramycin, Telithromycin |
| contig00093 | 4404 | 5048 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00003 | 5111 | 5755 | qnrE1_1 | 0/0 | 100.0 | 99.1 | KY073238 | qnrE1 | Ciprofloxacin |
| contig00118 | 2270 | 3085 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00115 | 1429 | 2697 | tet(A)_6 | 1/22 | 97.8 | 93.2 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00104 | 1309 | 2169 | AAC(3)-IId | 0/0 | 100.0 | 99.9 | EU022314.1:0-861 | AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00131 | 1695 | 2555 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00136 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00156 | 126 | 1090 | ANT(3’’)-IIa | 3/7 | 99.3 | 99.1 | X02340.1:222-1194 | ANT(3’’)-IIa is a aminoglycoside nucleotidyltransferase identified in Acinetobacter spp. via horizontal gene transfer mechanisms. | aminoglycoside |
| contig00118 | 1406 | 2209 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00118 | 570 | 1406 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00158 | 350 | 1004 | catI | 0/0 | 99.2 | 99.8 | V00622:243-903 | catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii | phenicol |
| contig00123 | 1704 | 2579 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00114 | 3115 | 3597 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00022 | 76314 | 77507 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 91.9 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00023 | 5385 | 5810 | FosA2 | 0/0 | 100.0 | 92.5 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00151 | 68 | 973 | mphA | 0/0 | 100.0 | 100.0 | D16251.1:2531-1625 | The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. | macrolide |
| contig00136 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00093 | 4367 | 5048 | QnrB17 | 1/1 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00003 | 5111 | 5755 | qnrE1 | 0/0 | 100.0 | 99.1 | KY073238.1:1678-2323 | qnrE1 is a member of the qnrE family of plasmid-borne (fluoro)quinolone-resistance genes with chromosomal origins from Enterobacter spp. | fluoroquinolone |
| contig00118 | 2270 | 3085 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00079 | 4012 | 4872 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00115 | 1429 | 2697 | tet(A) | 1/22 | 97.8 | 93.2 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00131 | 1695 | 2555 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00104 | 1309 | 2169 | (AGly)aac3-IId | 0/0 | 100.0 | 99.9 | EU022314:1-861 | (AGly)aac3-IId | NA |
| contig00156 | 126 | 937 | (AGly)aadA1-pm | 0/0 | 97.7 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00118 | 1406 | 2209 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00118 | 570 | 1406 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00123 | 1704 | 2579 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00136 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00079 | 4012 | 4872 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00023 | 5385 | 5810 | (Fcyn)FosA2 | 0/0 | 100.0 | 92.5 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00093 | 4367 | 5048 | (Flq)qnrB1 | 1/1 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00151 | 68 | 973 | (MLS)mph(A) | 0/0 | 100.0 | 100.0 | DQ445270:1626-2531 | (MLS)mph(A) | NA |
| contig00158 | 350 | 1004 | (Phe)catA1 | 0/0 | 99.2 | 99.8 | V00622:244-903 | (Phe)catA1 | NA |
| contig00118 | 2270 | 3085 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00115 | 1429 | 2725 | (Tet)tetA | 1/22 | 100.0 | 93.3 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00115 | 757 | 1398 | (Tet)tetR | 1/9 | 98.6 | 93.1 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00114 | 3115 | 3588 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00104 | 1309 | 2169 | aac(3)-IId | 0/0 | 100.0 | 100.0 | NG_047251.1 | aminoglycoside N-acetyltransferase AAC(3)-IId | GENTAMICIN |
| contig00131 | 1695 | 2555 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00136 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00156 | 126 | 917 | aadA1 | 0/0 | 100.0 | 100.0 | NG_052536.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00118 | 1406 | 2233 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00118 | 570 | 1406 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00123 | 1704 | 2579 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00136 | 578 | 1408 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00079 | 4012 | 4872 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00158 | 350 | 1004 | catA1 | 0/0 | 99.2 | 99.8 | NG_047582.1 | type A-1 chloramphenicol O-acetyltransferase | CHLORAMPHENICOL |
| contig00114 | 3115 | 3588 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00023 | 5385 | 5810 | fosA | 0/0 | 100.0 | 95.8 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00151 | 68 | 989 | mph(A) | 1/1 | 100.0 | 99.7 | NG_047986.1 | Mph(A) family macrolide 2’-phosphotransferase | MACROLIDE |
| contig00093 | 4404 | 5048 | qnrB1 | 0/0 | 100.0 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00003 | 5111 | 5755 | qnrE1 | 0/0 | 100.0 | 99.1 | NG_054677.1 | quinolone resistance pentapeptide repeat protein QnrE1 | QUINOLONE |
| contig00118 | 2270 | 3085 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00115 | 1526 | 2725 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048157.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00104 | 1309 | 2169 | AAC3 | 0/0 | 100.0 | 100.0 | MEG_64 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00131 | 1695 | 2555 | AAC3 | 0/0 | 100.0 | 99.8 | MEG_44 | Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 | NA |
| contig00022 | 76314 | 77507 | ACRB | 0/0 | 100.0 | 91.9 | MEG_402 | Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB | NA |
| contig00156 | 126 | 1090 | ANT3-DPRIME | 3/7 | 99.3 | 99.1 | MEG_949 | Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME | NA |
| contig00118 | 1406 | 2233 | APH3-DPRIME | 0/0 | 100.0 | 100.0 | MEG_1019 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME | NA |
| contig00118 | 570 | 1406 | APH6 | 0/0 | 100.0 | 100.0 | MEG_1086 | Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 | NA |
| contig00158 | 339 | 1004 | CATA | 0/0 | 99.2 | 100.0 | MEG_1593 | Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA | NA |
| contig00114 | 3115 | 3588 | DFRA | 0/0 | 100.0 | 99.8 | MEG_2517 | Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA | NA |
| contig00023 | 5385 | 5966 | FOSA | 0/0 | 100.0 | 93.0 | MEG_2990 | Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA | NA |
| contig00151 | 68 | 989 | MPHA | 1/1 | 100.0 | 99.7 | MEG_4030 | Drugs:MLS:Macrolide_phosphotransferases:MPHA | NA |
| contig00136 | 578 | 1408 | OXA | 0/0 | 100.0 | 100.0 | MEG_4980 | Drugs:betalactams:Class_D_betalactamases:OXA | NA |
| contig00093 | 4367 | 5048 | QNRB | 1/1 | 100.0 | 99.1 | MEG_5928 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB | NA |
| contig00003 | 5111 | 5755 | QNRE | 0/0 | 100.0 | 99.1 | MEG_6016 | Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRE | NA |
| contig00118 | 2270 | 3085 | SULII | 0/0 | 100.0 | 100.0 | MEG_6617 | Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII | NA |
| contig00079 | 3645 | 4890 | TEM | 0/0 | 98.3 | 99.4 | MEG_6875 | Drugs:betalactams:Class_A_betalactamases:TEM | NA |
| contig00115 | 1526 | 2725 | TETA | 0/0 | 100.0 | 100.0 | MEG_7021 | Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA | NA |
Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (genome) and query (antibiotic resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00049 | 23871 | 24430 | IncFIB(pECLA)_1_pECLA | 0/0 | 100 | 99.6 | CP001919 | IncFIB(pECLA)_1_pECLA_CP001919 |
| contig00093 | 1477 | 2223 | IncFII(pECLA)_1_pECLA | 0/0 | 100 | 99.6 | CP001919 | IncFII(pECLA)_1_pECLA_CP001919 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00037 | 39697 | 40023 | IncHI2_1 | 0/0 | 100 | 100 | BX664015 | IncHI2_1__BX664015 |
| contig00036 | 5790 | 6419 | IncHI2A_1 | 0/0 | 100 | 100 | BX664015 | IncHI2A_1__BX664015 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00036 | 6991 | 7737 | IncFII(pECLA)_1_pECLA | 0/0 | 100 | 97.9 | CP001919 | IncFII(pECLA)_1_pECLA_CP001919 |
| contig00030 | 22343 | 22669 | IncHI2_1 | 0/0 | 100 | 100.0 | BX664015 | IncHI2_1__BX664015 |
| contig00030 | 37535 | 38164 | IncHI2A_1 | 0/0 | 100 | 100.0 | BX664015 | IncHI2A_1__BX664015 |
| contig00052 | 11134 | 11384 | IncR_1 | 0/0 | 100 | 99.6 | DQ449578 | IncR_1__DQ449578 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00053 | 5287 | 5846 | IncFIB(pECLA)_1_pECLA | 0/0 | 100 | 100.0 | CP001919 | IncFIB(pECLA)_1_pECLA_CP001919 |
| contig00068 | 682 | 1428 | IncFII(pECLA)_1_pECLA | 0/0 | 100 | 99.9 | CP001919 | IncFII(pECLA)_1_pECLA_CP001919 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00044 | 3630 | 3771 | Col156_1 | 0/0 | 92.2 | 98.6 | NC_009781 | Col156_1__NC_009781 |
| contig00031 | 8363 | 9044 | IncFIB(AP001918)_1 | 0/0 | 100.0 | 96.6 | AP001918 | IncFIB(AP001918)_1__AP001918 |
| contig00029 | 6095 | 6353 | IncFII(29)_1_pUTI89 | 0/0 | 100.0 | 99.6 | CP003035 | IncFII(29)_1_pUTI89_CP003035 |
| contig00018 | 64985 | 65749 | IncY_1 | 0/0 | 100.0 | 99.7 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00338 | 4076 | 4229 | Col156_1 | 0/0 | 100 | 94.8 | NC_009781 | Col156_1__NC_009781 |
| contig00208 | 9859 | 10246 | IncFIA_1 | 0/0 | 100 | 99.7 | AP001918 | IncFIA_1__AP001918 |
| contig00165 | 1360 | 2041 | IncFIB(AP001918)_1 | 0/0 | 100 | 98.4 | AP001918 | IncFIB(AP001918)_1__AP001918 |
| contig00224 | 8852 | 9616 | IncY_1 | 0/0 | 100 | 99.7 | K02380 | IncY_1__K02380 |
## [1] "NO PLASMID FOUND!!"
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00251 | 6337 | 6467 | ColRNAI_1 | 1/1 | 100.0 | 90.8 | DQ298019 | ColRNAI_1__DQ298019 |
| contig00409 | 777 | 1163 | IncFIA(HI1)_1_HI1 | 0/0 | 99.7 | 98.5 | AF250878 | IncFIA(HI1)_1_HI1_AF250878 |
| contig00237 | 3423 | 3982 | IncFIB(K)_1_Kpn3 | 0/0 | 100.0 | 98.9 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00215 | 9508 | 9758 | IncR_1 | 0/0 | 100.0 | 100.0 | DQ449578 | IncR_1__DQ449578 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00067 | 3080 | 3193 | Col440I_1 | 0/0 | 100 | 92.1 | CP023920.1 | Col440I_1__CP023920.1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00470 | 40 | 526 | rep10_3_pNE131p1(pNE131) | 1/2 | 99.6 | 99.6 | NC001390 | rep10_3_pNE131p1(pNE131)_NC001390 |
| contig00916 | 51 | 987 | rep15_1_repA(pLW043) | 1/23 | 97.6 | 97.5 | AE017171 | rep15_1_repA(pLW043)_AE017171 |
| contig00020 | 24394 | 25137 | rep16_2_CDS6(pSJH101) | 0/0 | 100.0 | 98.8 | CP000737 | rep16_2_CDS6(pSJH101)_CP000737 |
| contig00020 | 25563 | 26546 | rep19_13_rep(pBORa53) | 0/0 | 100.0 | 99.2 | AY917098 | rep19_13_rep(pBORa53)_AY917098 |
| contig00020 | 22246 | 23106 | rep5a_1_repSAP001(pN315) | 0/0 | 100.0 | 99.5 | AP003139 | rep5a_1_repSAP001(pN315)_AP003139 |
| contig00274 | 3472 | 4426 | rep7a_12_repC(pKH17) | 1/10 | 100.0 | 98.4 | NC010284 | rep7a_12_repC(pKH17)_NC010284 |
| contig00338 | 1532 | 2402 | rep7a_7_rep(pKH7) | 0/0 | 93.3 | 92.2 | NC002096 | rep7a_7_rep(pKH7)_NC002096 |
| contig00007 | 14936 | 15756 | rep7c_1_rep(MSSA476) | 0/0 | 100.0 | 99.8 | BX571857 | rep7c_1_rep(MSSA476)_BX571857 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00104 | 1100 | 1210 | Col440I_1 | 0/0 | 97.4 | 92.8 | CP023920.1 | Col440I_1__CP023920.1 |
| contig00095 | 3360 | 3919 | IncFIB(K)_1_Kpn3 | 0/0 | 100.0 | 98.8 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00094 | 2722 | 2951 | IncFII(Yp)_1_Yersenia | 0/0 | 100.0 | 99.6 | CP000670 | IncFII(Yp)_1_Yersenia_CP000670 |
| contig00026 | 35316 | 35642 | IncHI2_1 | 0/0 | 100.0 | 100.0 | BX664015 | IncHI2_1__BX664015 |
| contig00026 | 50508 | 51137 | IncHI2A_1 | 0/0 | 100.0 | 100.0 | BX664015 | IncHI2A_1__BX664015 |
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00008 | 91742 | 92575 | + | csgG | 100.0 | 80.7 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00023 | 42378 | 43423 | + | ompA | 98.8 | 84.3 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00003 | 191814 | 192647 | + | csgG | 99.9 | 81.2 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00004 | 19062 | 20117 | + | ompA | 100.0 | 84.4 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00002 | 24652 | 25481 | - | csgG | 99.4 | 80.8 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00015 | 89169 | 90019 | - | entB | 99.1 | 80.0 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00011 | 36876 | 38038 | - | iroB | 99.9 | 89.8 | NP_753168 | (iroB) glucosyltransferase IroB [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00011 | 33089 | 36816 | - | iroC | 99.6 | 89.1 | NP_753167 | (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00011 | 31744 | 32973 | - | iroD | 100.0 | 87.8 | NP_753166 | (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00011 | 30716 | 31660 | - | iroE | 98.8 | 86.0 | NP_753165 | (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00011 | 28497 | 30671 | + | iroN | 99.9 | 91.3 | NP_753164 | (iroN) salmochelin receptor IroN [IroN (VF0230)] [Escherichia coli CFT073] |
| contig00012 | 94869 | 95911 | - | ompA | 99.0 | 84.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00026 | 16647 | 17689 | - | ompA | 99 | 84.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00039 | 10638 | 10943 | - | afaA | 100.0 | 100.0 | CAW30797 | (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00039 | 9626 | 10370 | - | afaB-I | 100.0 | 99.1 | CAW30798 | (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00039 | 6951 | 9533 | - | afaC-I | 100.0 | 98.8 | CAW30799 | (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00039 | 6492 | 6935 | - | afaD | 100.0 | 94.4 | CAW30800 | (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00015 | 71278 | 72706 | + | aslA | 100.0 | 98.2 | AAG10151 | (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00010 | 172148 | 174094 | - | chuA | 100.0 | 99.5 | NP_756170 | (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 171071 | 172099 | - | chuS | 100.0 | 99.0 | NP_756169 | (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 174737 | 175729 | + | chuT | 100.0 | 99.8 | NP_756175 | (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 178265 | 179257 | + | chuU | 100.0 | 99.3 | NP_756179 | (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 179224 | 180024 | + | chuV | 100.0 | 99.8 | NP_756180 | (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 175749 | 177086 | + | chuW | 100.0 | 99.2 | NP_756176 | (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 177099 | 177593 | + | chuX | 100.0 | 100.0 | NP_756177 | (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00010 | 177593 | 178216 | + | chuY | 100.0 | 98.4 | NP_756178 | (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00007 | 100536 | 100991 | - | csgB | 99.8 | 83.8 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00007 | 101744 | 102394 | + | csgD | 100.0 | 81.6 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00007 | 102813 | 103229 | + | csgF | 99.0 | 80.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00007 | 103256 | 104089 | + | csgG | 100.0 | 83.2 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00104 | 383 | 610 | + | daaF | 100.0 | 98.7 | AAA23662 | (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845] |
| contig00039 | 5912 | 6085 | - | draP | 100.0 | 98.8 | AAK16479 | (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128] |
| contig00001 | 281533 | 282279 | - | entA | 100.0 | 98.1 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 282279 | 283136 | - | entB | 100.0 | 99.5 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 284770 | 285957 | - | entC | 100.0 | 99.4 | NP_752611 | (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 300415 | 301076 | + | entD | 85.9 | 97.7 | NP_752599 | (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 283150 | 284760 | - | entE | 100.0 | 99.1 | NP_752612 | (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 292634 | 296487 | - | entF | 99.3 | 97.8 | NP_752604 | (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 287094 | 288344 | - | entS | 100.0 | 98.3 | NP_752609 | (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00001 | 573844 | 578091 | - | fdeC | 99.9 | 97.4 | YP_002390132 | (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88] |
| contig00001 | 298150 | 300390 | + | fepA | 100.0 | 98.8 | NP_752600 | (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 286134 | 287090 | + | fepB | 100.0 | 99.7 | NP_752610 | (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 290445 | 291260 | + | fepC | 100.0 | 99.1 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 288443 | 289459 | + | fepD | 100.0 | 97.8 | NP_752608 | (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 289456 | 290448 | + | fepG | 100.0 | 97.7 | NP_752607 | (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 296705 | 297907 | - | fes | 100.0 | 99.2 | NP_752602 | (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00028 | 25810 | 26414 | - | fimA | 99.8 | 90.8 | NP_757241 | (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00051 | 5424 | 6026 | + | fimB | 100.0 | 97.8 | NP_757239 | (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00028 | 24444 | 25169 | - | fimC | 100.0 | 98.6 | NP_757243 | (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00028 | 21741 | 24377 | - | fimD | 100.0 | 98.9 | NP_757244 | (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00051 | 6504 | 7100 | + | fimE | 100.0 | 98.8 | NP_757240 | (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00028 | 21201 | 21734 | - | fimF | 100.0 | 99.1 | NP_757245 | (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00028 | 20685 | 21188 | - | fimG | 100.0 | 98.2 | NP_757247 | (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00028 | 19763 | 20674 | - | fimH | 100.0 | 97.6 | NP_757248 | (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00028 | 25206 | 25745 | - | fimI | 100.0 | 98.5 | NP_757242 | (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00035 | 7949 | 9970 | + | fyuA | 100.0 | 99.9 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 22553 | 23412 | - | gspL | 99.9 | 94.7 | YP_404608 | (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00004 | 22016 | 22437 | - | gspM | 99.8 | 92.4 | YP_404609 | (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00040 | 698 | 6181 | + | irp2 | 89.8 | 99.4 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00034 | 2017 | 3798 | + | iucA | 100.0 | 99.8 | NP_709454 | (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301] |
| contig00034 | 3799 | 4746 | + | iucB | 100.0 | 99.8 | NP_709455 | (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301] |
| contig00034 | 4746 | 6488 | + | iucC | 100.0 | 98.1 | NP_755500 | (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00034 | 6485 | 7806 | + | iucD | 98.8 | 96.3 | NP_755499 | (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00034 | 7744 | 10045 | + | iutA | 100.0 | 88.4 | NP_755498 | (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00004 | 5868 | 7544 | + | kpsD | 100.0 | 98.8 | AAA21682 | (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00004 | 20065 | 20841 | - | kpsM | 100.0 | 91.1 | AAA24046 | (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00007 | 170971 | 172023 | + | ompA | 100.0 | 95.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00070 | 760 | 1073 | - | papB | 99.7 | 98.4 | (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073] | |
| contig00070 | 1479 | 1712 | + | papI | 100.0 | 94.9 | NP_755468 | (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00105 | 256 | 807 | + | papX | 100.0 | 97.6 | NP_755457 | (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073] |
| contig00034 | 10977 | 14876 | + | sat | 100.0 | 99.5 | NP_755494 | (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073] |
| contig00044 | 8438 | 9576 | + | senB | 99.9 | 99.7 | YP_406304 | (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301] |
| contig00001 | 593429 | 594182 | + | yagV/ecpE | 99.7 | 98.0 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 591862 | 593505 | + | yagW/ecpD | 100.0 | 99.1 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 589347 | 591872 | + | yagX/ecpC | 100.0 | 97.6 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 588653 | 589321 | + | yagY/ecpB | 100.0 | 98.1 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 588009 | 588596 | + | yagZ/ecpA | 100.0 | 98.3 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00003 | 312257 | 313216 | + | ybtA | 100.0 | 99.5 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00035 | 6240 | 7817 | + | ybtE | 100.0 | 99.8 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00003 | 310288 | 312090 | - | ybtP | 100.0 | 99.6 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00003 | 308499 | 310301 | - | ybtQ | 100.0 | 99.6 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00003 | 305894 | 307198 | - | ybtS | 100.0 | 99.8 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00035 | 5433 | 6236 | + | ybtT | 100.0 | 99.5 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00035 | 4336 | 5436 | + | ybtU | 100.0 | 99.6 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00003 | 307226 | 308506 | - | ybtX | 100.0 | 99.5 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 587344 | 587934 | + | ykgK/ecpR | 100.0 | 99.5 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00018 | 16823 | 18251 | - | aslA | 100.0 | 97.1 | AAG10151 | (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00036 | 56535 | 57335 | - | chuV | 100.0 | 98.9 | NP_756180 | (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00277 | 1630 | 2967 | - | chuW | 100.0 | 96.7 | NP_756176 | (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00277 | 500 | 1123 | - | chuY | 100.0 | 97.0 | NP_756178 | (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00041 | 49942 | 50397 | + | csgB | 99.8 | 83.8 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00041 | 48537 | 49187 | - | csgD | 100.0 | 81.4 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00041 | 47702 | 48118 | - | csgF | 99.0 | 81.0 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00041 | 46842 | 47675 | - | csgG | 100.0 | 83.3 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00034 | 53819 | 54565 | + | entA | 100.0 | 95.2 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 52962 | 53819 | + | entB | 100.0 | 98.5 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 50141 | 51328 | + | entC | 100.0 | 97.6 | NP_752611 | (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 34914 | 35684 | - | entD | 100.0 | 92.1 | NP_752599 | (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 51338 | 52948 | + | entE | 100.0 | 97.3 | NP_752612 | (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 39612 | 43465 | + | entF | 99.2 | 95.2 | NP_752604 | (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 47754 | 49004 | + | entS | 100.0 | 96.4 | NP_752609 | (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00190 | 13934 | 15832 | - | espL1 | 100.0 | 96.5 | NP_288154 | (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00039 | 6942 | 9128 | - | espL4 | 100.0 | 96.5 | NP_290644 | (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00024 | 52924 | 54176 | + | espR1 | 99.4 | 94.0 | NP_287686 | (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00015 | 2519 | 3627 | - | espR4 | 97.2 | 84.4 | NP_288396 | (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 80977 | 82398 | + | espX1 | 100.0 | 96.1 | NP_285716 | (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00039 | 42127 | 43707 | + | espX4 | 100.0 | 95.9 | NP_290672 | (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00032 | 42646 | 43938 | + | espX5 | 100.0 | 96.0 | NP_290699 | (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 41080 | 41831 | - | espY1 | 99.9 | 95.8 | NP_285753 | (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 24133 | 24702 | - | espY2 | 100.0 | 94.9 | NP_285765 | (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00005 | 64735 | 66306 | - | espY3 | 100.0 | 95.9 | NP_286160 | (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00349 | 983 | 3390 | + | espY4 | 100.0 | 96.2 | NP_290352 | (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 6392 | 10642 | - | fdeC | 100.0 | 95.3 | YP_002390132 | (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88] |
| contig00034 | 35709 | 37949 | - | fepA | 100.0 | 96.8 | NP_752600 | (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 49008 | 49964 | - | fepB | 100.0 | 97.9 | NP_752610 | (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 44838 | 45653 | - | fepC | 100.0 | 97.3 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 46639 | 47655 | - | fepD | 100.0 | 96.4 | NP_752608 | (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 45650 | 46642 | - | fepG | 100.0 | 95.3 | NP_752607 | (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 38192 | 39394 | + | fes | 100.0 | 96.8 | NP_752602 | (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00013 | 59321 | 59932 | + | fimA | 100.0 | 88.4 | NP_757241 | (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 57221 | 57823 | + | fimB | 100.0 | 98.2 | NP_757239 | (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 60573 | 61298 | + | fimC | 100.0 | 98.5 | NP_757243 | (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 61365 | 64001 | + | fimD | 100.0 | 98.5 | NP_757244 | (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 58300 | 58894 | + | fimE | 99.7 | 99.3 | NP_757240 | (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 64008 | 64541 | + | fimF | 100.0 | 97.8 | NP_757245 | (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 64554 | 65057 | + | fimG | 100.0 | 98.0 | NP_757247 | (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 65068 | 65979 | + | fimH | 100.0 | 97.3 | NP_757248 | (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 59997 | 60536 | + | fimI | 100.0 | 98.9 | NP_757242 | (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00015 | 63561 | 65582 | + | fyuA | 100.0 | 100.0 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00168 | 2431 | 3261 | + | gspC | 100.0 | 94.6 | YP_404599 | (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 3501 | 5351 | + | gspD | 100.0 | 95.3 | YP_404600 | (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 5351 | 6844 | + | gspE | 100.0 | 95.0 | YP_404601 | (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 6844 | 8043 | + | gspF | 100.0 | 95.2 | YP_404602 | (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 8084 | 8539 | + | gspG | 100.0 | 98.0 | YP_404603 | (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 8576 | 9106 | + | gspH | 100.0 | 95.9 | YP_404604 | (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 9103 | 9474 | + | gspI | 100.0 | 96.0 | YP_404605 | (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 9507 | 10076 | + | gspJ | 100.0 | 95.3 | YP_404606 | (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 10073 | 11050 | + | gspK | 100.0 | 96.6 | YP_404607 | (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 11365 | 12225 | + | gspL | 100.0 | 95.0 | YP_404608 | (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 12341 | 12762 | + | gspM | 99.8 | 92.2 | YP_404609 | (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00015 | 50461 | 59952 | + | irp1 | 100.0 | 99.7 | NP_405471 | (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 44266 | 50373 | + | irp2 | 100.0 | 99.5 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00103 | 12994 | 14781 | + | iucA | 100.0 | 100.0 | NP_755502 | (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 14782 | 15729 | + | iucB | 100.0 | 99.9 | NP_755501 | (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 15729 | 17471 | + | iucC | 100.0 | 100.0 | NP_755500 | (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 17468 | 18805 | + | iucD | 100.0 | 100.0 | NP_755499 | (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 18727 | 21006 | + | iutA | 100.0 | 100.0 | NP_755498 | (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00121 | 12014 | 13690 | - | kpsD | 100.0 | 98.2 | AAA21682 | (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00168 | 13819 | 14595 | + | kpsM | 100.0 | 94.2 | AAA24046 | (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00113 | 9287 | 10339 | - | ompA | 100.0 | 95.2 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00260 | 1648 | 4170 | + | papC | 100.0 | 99.8 | NP_755465 | (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 4370 | 4975 | + | papD | 100.0 | 100.0 | NP_755464 | (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 6738 | 7268 | + | papF | 100.0 | 99.2 | NP_755459 | (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 7312 | 8322 | + | papG | 100.0 | 98.3 | NP_755458 | (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 1014 | 1601 | + | papH | 100.0 | 99.2 | NP_755466 | (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00330 | 4864 | 5097 | - | papI | 100.0 | 100.0 | NP_755468 | (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 5012 | 5593 | + | papJ | 100.0 | 98.8 | NP_755463 | (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 5600 | 6139 | + | papK | 100.0 | 99.4 | NP_755461 | (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 8585 | 9136 | + | papX | 100.0 | 100.0 | NP_755457 | (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073] |
| contig00103 | 21938 | 25837 | + | sat | 100.0 | 99.9 | NP_755494 | (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073] |
| contig00277 | 4585 | 6567 | + | shuA | 100.0 | 98.5 | YP_405019 | (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00277 | 6616 | 7644 | + | shuS | 100.0 | 96.5 | YP_405020 | (shuS) heme/hemoglobin transport protein ShuS [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00277 | 2987 | 3979 | - | shuT | 100.0 | 98.3 | YP_405017 | (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00277 | 1123 | 1617 | - | shuX | 100.0 | 96.4 | YP_405016 | (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00020 | 26077 | 26830 | + | yagV/ecpE | 99.7 | 97.9 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 24510 | 26153 | + | yagW/ecpD | 100.0 | 98.9 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 21995 | 24520 | + | yagX/ecpC | 100.0 | 97.9 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 21301 | 21969 | + | yagY/ecpB | 100.0 | 97.5 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 20657 | 21244 | + | yagZ/ecpA | 100.0 | 99.0 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00015 | 43116 | 44075 | + | ybtA | 100.0 | 99.5 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 61853 | 63430 | + | ybtE | 100.0 | 99.9 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 41147 | 42949 | - | ybtP | 100.0 | 99.7 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 39358 | 41160 | - | ybtQ | 100.0 | 99.7 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 36753 | 38057 | - | ybtS | 100.0 | 99.8 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 61046 | 61849 | + | ybtT | 100.0 | 99.8 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 59949 | 61049 | + | ybtU | 100.0 | 99.6 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 38085 | 39365 | - | ybtX | 100.0 | 99.6 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00020 | 19992 | 20582 | + | ykgK/ecpR | 100.0 | 99.0 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
## Error in read.table("ORTHO006E_vfdb.tab", header = T, sep = "\t", dec = ".", : no lines available in input
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00018 | 16823 | 18251 | - | aslA | 100.0 | 97.1 | AAG10151 | (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00036 | 56535 | 57335 | - | chuV | 100.0 | 98.9 | NP_756180 | (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00277 | 1630 | 2967 | - | chuW | 100.0 | 96.7 | NP_756176 | (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00277 | 500 | 1123 | - | chuY | 100.0 | 97.0 | NP_756178 | (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00041 | 49942 | 50397 | + | csgB | 99.8 | 83.8 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00041 | 48537 | 49187 | - | csgD | 100.0 | 81.4 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00041 | 47702 | 48118 | - | csgF | 99.0 | 81.0 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00041 | 46842 | 47675 | - | csgG | 100.0 | 83.3 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00034 | 53819 | 54565 | + | entA | 100.0 | 95.2 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 52962 | 53819 | + | entB | 100.0 | 98.5 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 50141 | 51328 | + | entC | 100.0 | 97.6 | NP_752611 | (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 34914 | 35684 | - | entD | 100.0 | 92.1 | NP_752599 | (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 51338 | 52948 | + | entE | 100.0 | 97.3 | NP_752612 | (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 39612 | 43465 | + | entF | 99.2 | 95.2 | NP_752604 | (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 47754 | 49004 | + | entS | 100.0 | 96.4 | NP_752609 | (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00190 | 13934 | 15832 | - | espL1 | 100.0 | 96.5 | NP_288154 | (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00039 | 6942 | 9128 | - | espL4 | 100.0 | 96.5 | NP_290644 | (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00024 | 52924 | 54176 | + | espR1 | 99.4 | 94.0 | NP_287686 | (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00015 | 2519 | 3627 | - | espR4 | 97.2 | 84.4 | NP_288396 | (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 80977 | 82398 | + | espX1 | 100.0 | 96.1 | NP_285716 | (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00039 | 42127 | 43707 | + | espX4 | 100.0 | 95.9 | NP_290672 | (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00032 | 42646 | 43938 | + | espX5 | 100.0 | 96.0 | NP_290699 | (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 41080 | 41831 | - | espY1 | 99.9 | 95.8 | NP_285753 | (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 24133 | 24702 | - | espY2 | 100.0 | 94.9 | NP_285765 | (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00005 | 64735 | 66306 | - | espY3 | 100.0 | 95.9 | NP_286160 | (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00349 | 983 | 3390 | + | espY4 | 100.0 | 96.2 | NP_290352 | (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 6392 | 10642 | - | fdeC | 100.0 | 95.3 | YP_002390132 | (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88] |
| contig00034 | 35709 | 37949 | - | fepA | 100.0 | 96.8 | NP_752600 | (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 49008 | 49964 | - | fepB | 100.0 | 97.9 | NP_752610 | (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 44838 | 45653 | - | fepC | 100.0 | 97.3 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 46639 | 47655 | - | fepD | 100.0 | 96.4 | NP_752608 | (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 45650 | 46642 | - | fepG | 100.0 | 95.3 | NP_752607 | (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00034 | 38192 | 39394 | + | fes | 100.0 | 96.8 | NP_752602 | (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00013 | 59321 | 59932 | + | fimA | 100.0 | 88.4 | NP_757241 | (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 57221 | 57823 | + | fimB | 100.0 | 98.2 | NP_757239 | (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 60573 | 61298 | + | fimC | 100.0 | 98.5 | NP_757243 | (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 61365 | 64001 | + | fimD | 100.0 | 98.5 | NP_757244 | (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 58300 | 58894 | + | fimE | 99.7 | 99.3 | NP_757240 | (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 64008 | 64541 | + | fimF | 100.0 | 97.8 | NP_757245 | (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 64554 | 65057 | + | fimG | 100.0 | 98.0 | NP_757247 | (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 65068 | 65979 | + | fimH | 100.0 | 97.3 | NP_757248 | (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00013 | 59997 | 60536 | + | fimI | 100.0 | 98.9 | NP_757242 | (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00015 | 63561 | 65582 | + | fyuA | 100.0 | 100.0 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00168 | 2431 | 3261 | + | gspC | 100.0 | 94.6 | YP_404599 | (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 3501 | 5351 | + | gspD | 100.0 | 95.3 | YP_404600 | (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 5351 | 6844 | + | gspE | 100.0 | 95.0 | YP_404601 | (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 6844 | 8043 | + | gspF | 100.0 | 95.2 | YP_404602 | (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 8084 | 8539 | + | gspG | 100.0 | 98.0 | YP_404603 | (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 8576 | 9106 | + | gspH | 100.0 | 95.9 | YP_404604 | (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 9103 | 9474 | + | gspI | 100.0 | 96.0 | YP_404605 | (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 9507 | 10076 | + | gspJ | 100.0 | 95.3 | YP_404606 | (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 10073 | 11050 | + | gspK | 100.0 | 96.6 | YP_404607 | (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 11365 | 12225 | + | gspL | 100.0 | 95.0 | YP_404608 | (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00168 | 12341 | 12762 | + | gspM | 99.8 | 92.2 | YP_404609 | (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00015 | 50461 | 59952 | + | irp1 | 100.0 | 99.7 | NP_405471 | (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 44266 | 50373 | + | irp2 | 100.0 | 99.5 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00103 | 12994 | 14781 | + | iucA | 100.0 | 100.0 | NP_755502 | (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 14782 | 15729 | + | iucB | 100.0 | 99.9 | NP_755501 | (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 15729 | 17471 | + | iucC | 100.0 | 100.0 | NP_755500 | (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 17468 | 18805 | + | iucD | 100.0 | 100.0 | NP_755499 | (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00103 | 18727 | 21006 | + | iutA | 100.0 | 100.0 | NP_755498 | (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00121 | 12014 | 13690 | - | kpsD | 100.0 | 98.2 | AAA21682 | (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00168 | 13819 | 14595 | + | kpsM | 100.0 | 94.2 | AAA24046 | (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00113 | 9287 | 10339 | - | ompA | 100.0 | 95.2 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00260 | 1648 | 4170 | + | papC | 100.0 | 99.8 | NP_755465 | (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 4370 | 4975 | + | papD | 100.0 | 100.0 | NP_755464 | (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 6738 | 7268 | + | papF | 100.0 | 99.2 | NP_755459 | (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 7312 | 8322 | + | papG | 100.0 | 98.3 | NP_755458 | (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 1014 | 1601 | + | papH | 100.0 | 99.2 | NP_755466 | (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00330 | 4864 | 5097 | - | papI | 100.0 | 100.0 | NP_755468 | (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 5012 | 5593 | + | papJ | 100.0 | 98.8 | NP_755463 | (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 5600 | 6139 | + | papK | 100.0 | 99.4 | NP_755461 | (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073] |
| contig00260 | 8585 | 9136 | + | papX | 100.0 | 100.0 | NP_755457 | (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073] |
| contig00103 | 21938 | 25837 | + | sat | 100.0 | 99.9 | NP_755494 | (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073] |
| contig00277 | 4585 | 6567 | + | shuA | 100.0 | 98.5 | YP_405019 | (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00277 | 6616 | 7644 | + | shuS | 100.0 | 96.5 | YP_405020 | (shuS) heme/hemoglobin transport protein ShuS [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00277 | 2987 | 3979 | - | shuT | 100.0 | 98.3 | YP_405017 | (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00277 | 1123 | 1617 | - | shuX | 100.0 | 96.4 | YP_405016 | (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00020 | 26077 | 26830 | + | yagV/ecpE | 99.7 | 97.9 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 24510 | 26153 | + | yagW/ecpD | 100.0 | 98.9 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 21995 | 24520 | + | yagX/ecpC | 100.0 | 97.9 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 21301 | 21969 | + | yagY/ecpB | 100.0 | 97.5 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00020 | 20657 | 21244 | + | yagZ/ecpA | 100.0 | 99.0 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00015 | 43116 | 44075 | + | ybtA | 100.0 | 99.5 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 61853 | 63430 | + | ybtE | 100.0 | 99.9 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 41147 | 42949 | - | ybtP | 100.0 | 99.7 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 39358 | 41160 | - | ybtQ | 100.0 | 99.7 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 36753 | 38057 | - | ybtS | 100.0 | 99.8 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 61046 | 61849 | + | ybtT | 100.0 | 99.8 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 59949 | 61049 | + | ybtU | 100.0 | 99.6 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 38085 | 39365 | - | ybtX | 100.0 | 99.6 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00020 | 19992 | 20582 | + | ykgK/ecpR | 100.0 | 99.0 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00002 | 302085 | 302390 | - | afaA | 100.0 | 100.0 | CAW30797 | (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00002 | 301029 | 301773 | - | afaB-I | 100.0 | 99.7 | CAW30798 | (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00002 | 298354 | 300936 | - | afaC-I | 100.0 | 99.7 | CAW30799 | (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] |
| contig00017 | 64595 | 66023 | + | aslA | 100.0 | 97.3 | AAG10151 | (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00004 | 186108 | 187136 | - | chuS | 100.0 | 98.0 | NP_756169 | (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00004 | 189773 | 190765 | + | chuT | 100.0 | 98.5 | NP_756175 | (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00004 | 193301 | 194293 | + | chuU | 100.0 | 98.9 | NP_756179 | (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00004 | 194260 | 195060 | + | chuV | 100.0 | 99.2 | NP_756180 | (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00004 | 190785 | 192122 | + | chuW | 100.0 | 98.0 | NP_756176 | (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00004 | 192135 | 192629 | + | chuX | 100.0 | 97.8 | NP_756177 | (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00004 | 192629 | 193252 | + | chuY | 100.0 | 98.4 | NP_756178 | (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073] |
| contig00013 | 62165 | 62620 | - | csgB | 99.8 | 83.6 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00013 | 63375 | 64025 | + | csgD | 100.0 | 81.3 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00013 | 64444 | 64860 | + | csgF | 99.0 | 81.2 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00013 | 64887 | 65720 | + | csgG | 100.0 | 83.0 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00019 | 74399 | 75228 | + | csgG | 99.4 | 80.6 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00337 | 1 | 203 | + | daaF | 89.0 | 100.0 | AAA23662 | (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845] |
| contig00002 | 297895 | 298338 | - | draD | 100.0 | 99.8 | AAK16478 | (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128] |
| contig00002 | 297350 | 297523 | - | draP | 100.0 | 99.4 | AAK16479 | (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128] |
| contig00012 | 83027 | 83773 | - | entA | 100.0 | 97.3 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 83773 | 84630 | - | entB | 100.0 | 99.0 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 86264 | 87451 | - | entC | 100.0 | 99.2 | NP_752611 | (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 101921 | 102554 | + | entD | 82.2 | 93.1 | NP_752599 | (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 84644 | 86254 | - | entE | 100.0 | 93.2 | NP_752612 | (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 94128 | 97981 | - | entF | 99.3 | 97.1 | NP_752604 | (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 88588 | 89838 | - | entS | 100.0 | 97.0 | NP_752609 | (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00006 | 37159 | 39057 | - | espL1 | 100.0 | 96.0 | NP_288154 | (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00045 | 32344 | 33594 | + | espR1 | 99.3 | 94.6 | NP_287686 | (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00007 | 58092 | 59672 | + | espX4 | 100.0 | 95.8 | NP_290672 | (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 145872 | 146441 | - | espY2 | 100.0 | 94.0 | NP_285765 | (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00023 | 44742 | 47150 | + | espY4 | 99.8 | 89.2 | NP_290352 | (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00028 | 24314 | 28561 | + | fdeC | 99.9 | 92.4 | YP_002390132 | (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88] |
| contig00012 | 99644 | 101884 | + | fepA | 100.0 | 97.2 | NP_752600 | (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 87628 | 88584 | + | fepB | 100.0 | 98.0 | NP_752610 | (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 91939 | 92754 | + | fepC | 100.0 | 97.3 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 89937 | 90953 | + | fepD | 100.0 | 95.9 | NP_752608 | (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 90950 | 91942 | + | fepG | 100.0 | 94.5 | NP_752607 | (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 98199 | 99401 | - | fes | 100.0 | 96.3 | NP_752602 | (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig00001 | 319127 | 319730 | - | fimA | 99.7 | 89.6 | NP_757241 | (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 321230 | 321832 | - | fimB | 100.0 | 98.3 | NP_757239 | (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 317761 | 318486 | - | fimC | 100.0 | 99.0 | NP_757243 | (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 315058 | 317694 | - | fimD | 100.0 | 98.8 | NP_757244 | (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 320156 | 320752 | - | fimE | 100.0 | 99.2 | NP_757240 | (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 314518 | 315051 | - | fimF | 100.0 | 97.6 | NP_757245 | (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 314002 | 314505 | - | fimG | 100.0 | 99.2 | NP_757247 | (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 313080 | 313991 | - | fimH | 100.0 | 98.8 | NP_757248 | (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00001 | 318523 | 319062 | - | fimI | 100.0 | 99.3 | NP_757242 | (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00058 | 25185 | 26015 | + | gspC | 100.0 | 95.0 | YP_404599 | (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 26255 | 28105 | + | gspD | 100.0 | 96.2 | YP_404600 | (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 28105 | 29598 | + | gspE | 100.0 | 94.9 | YP_404601 | (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 29598 | 30797 | + | gspF | 100.0 | 94.2 | YP_404602 | (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 30838 | 31293 | + | gspG | 100.0 | 96.3 | YP_404603 | (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 31330 | 31860 | + | gspH | 100.0 | 94.7 | YP_404604 | (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 31857 | 32228 | + | gspI | 100.0 | 92.5 | YP_404605 | (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 32261 | 32830 | + | gspJ | 100.0 | 94.6 | YP_404606 | (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 32827 | 33804 | + | gspK | 100.0 | 97.0 | YP_404607 | (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 34119 | 34979 | + | gspL | 100.0 | 94.4 | YP_404608 | (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00058 | 35095 | 35516 | + | gspM | 99.8 | 94.1 | YP_404609 | (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00027 | 24051 | 25213 | - | iroB | 99.9 | 89.8 | NP_753168 | (iroB) glucosyltransferase IroB [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00027 | 20264 | 23991 | - | iroC | 99.6 | 89.0 | NP_753167 | (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00027 | 18919 | 20148 | - | iroD | 100.0 | 87.6 | NP_753166 | (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00027 | 17891 | 18835 | - | iroE | 98.8 | 85.9 | NP_753165 | (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073] |
| contig00027 | 15672 | 17846 | + | iroN | 99.9 | 91.4 | NP_753164 | (iroN) salmochelin receptor IroN [IroN (VF0230)] [Escherichia coli CFT073] |
| contig00124 | 8600 | 10276 | + | kpsD | 100.0 | 98.3 | AAA21682 | (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00013 | 126973 | 127991 | + | ompA | 96.7 | 95.3 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00121 | 12775 | 13817 | - | ompA | 99.0 | 84.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00004 | 187185 | 189167 | - | shuA | 100.0 | 98.1 | YP_405019 | (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197] |
| contig00028 | 8147 | 8900 | - | yagV/ecpE | 99.7 | 98.1 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00028 | 8824 | 10467 | - | yagW/ecpD | 100.0 | 99.0 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00028 | 10457 | 12982 | - | yagX/ecpC | 100.0 | 98.8 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00028 | 13008 | 13676 | - | yagY/ecpB | 100.0 | 99.0 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00028 | 13734 | 14321 | - | yagZ/ecpA | 100.0 | 99.0 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00028 | 14396 | 14986 | - | ykgK/ecpR | 100.0 | 99.7 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00004 | 3257 | 4090 | - | csgG | 99.9 | 80.1 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00068 | 6647 | 7390 | + | entA | 99.1 | 80.2 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00015 | 63257 | 64299 | - | ompA | 99.0 | 84.6 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00024 | 10040 | 12358 | + | adsA | 100.0 | 96.7 | NP_644838 | (adsA) Adenosine synthase A [AdsA (VF0422)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00450 | 256 | 2562 | - | adsA | 99.5 | 96.1 | NP_644838 | (adsA) Adenosine synthase A [AdsA (VF0422)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00260 | 3403 | 4769 | + | aur | 89.3 | 99.6 | NP_647375 | (aur) zinc metalloproteinase aureolysin [Aureolysin (VF0024)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 9770 | 10286 | - | cap8A | 100.0 | 99.4 | NP_644939 | (cap8A) capsular polysaccharide synthesis enzyme [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00573 | 1 | 424 | + | cap8A | 82.0 | 94.8 | NP_644939 | (cap8A) capsular polysaccharide synthesis enzyme [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 8916 | 9602 | - | cap8B | 100.0 | 99.0 | NP_644940 | (cap8B) capsular polysaccharide synthesis enzyme Cap8B [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00573 | 592 | 1278 | + | cap8B | 100.0 | 93.9 | NP_644940 | (cap8B) capsular polysaccharide synthesis enzyme Cap8B [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 8149 | 8913 | - | cap8C | 100.0 | 99.5 | NP_644941 | (cap8C) capsular polysaccharide synthesis enzyme Cap8C [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00573 | 1281 | 1915 | + | cap8C | 83.0 | 97.6 | NP_644941 | (cap8C) capsular polysaccharide synthesis enzyme Cap8C [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 6306 | 8129 | - | cap8D | 100.0 | 99.9 | NP_644942 | (cap8D) capsular polysaccharide synthesis enzyme Cap8D [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00509 | 1 | 1575 | + | cap8D | 86.3 | 98.5 | NP_644942 | (cap8D) capsular polysaccharide synthesis enzyme Cap8D [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 5288 | 6316 | - | cap8E | 100.0 | 99.1 | NP_644943 | (cap8E) capsular polysaccharide synthesis enzyme Cap8E [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 4166 | 5275 | - | cap8F | 100.0 | 99.5 | NP_644944 | (cap8F) capsular polysaccharide synthesis enzyme Cap8F [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00599 | 112 | 1221 | + | cap8F | 100.0 | 97.0 | NP_644944 | (cap8F) capsular polysaccharide synthesis enzyme Cap8F [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00007 | 3038 | 4162 | - | cap8G | 100.0 | 99.6 | NP_644945 | (cap8G) capsular polysaccharide synthesis enzyme Cap8G [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00172 | 1063 | 2268 | + | cap8L | 100.0 | 99.8 | NP_644950 | (cap8L) capsular polysaccharide synthesis enzyme Cap8L [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00291 | 553 | 1758 | + | cap8L | 100.0 | 97.8 | NP_644950 | (cap8L) capsular polysaccharide synthesis enzyme Cap8L [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00172 | 2279 | 2836 | + | cap8M | 100.0 | 99.8 | NP_644951 | (cap8M) capsular polysaccharide synthesis enzyme Cap8M [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00291 | 1769 | 2326 | + | cap8M | 100.0 | 98.0 | NP_644951 | (cap8M) capsular polysaccharide synthesis enzyme Cap8M [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00172 | 2836 | 3723 | + | cap8N | 100.0 | 98.7 | NP_644952 | (cap8N) capsular polysaccharide synthesis enzyme Cap8N [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00291 | 2326 | 3213 | + | cap8N | 100.0 | 97.8 | NP_644952 | (cap8N) capsular polysaccharide synthesis enzyme Cap8N [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00172 | 3777 | 5039 | + | cap8O | 100.0 | 98.7 | NP_644953 | (cap8O) capsular polysaccharide synthesis enzyme Cap8O [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00172 | 5116 | 6261 | + | cap8P | 100.0 | 99.4 | NP_644954 | (cap8P) capsular polysaccharide synthesis enzyme Cap8P [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00010 | 4569 | 5018 | - | chp | 100.0 | 99.8 | YP_001332911 | (chp) chemotaxis-inhibiting protein CHIPS [CHIPS (VF0424)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00009 | 5715 | 8534 | - | clfA | 98.7 | 96.0 | NP_645581 | (clfA) Clumping factor A fibrinogen-binding protein [Clumping factor (VF0004)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00004 | 40121 | 42898 | - | clfB | 99.9 | 90.7 | NP_647368 | (clfB) Clumping factor B adhesin [Clumping factor (VF0004)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00017 | 2273 | 4183 | + | coa | 98.6 | 80.3 | NP_645021 | (coa) staphylocoagulase precursor [Staphylocoagulase (VF0421)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00463 | 126 | 1769 | + | coa | 86.3 | 84.0 | NP_645021 | (coa) staphylocoagulase precursor [Staphylocoagulase (VF0421)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00067 | 2820 | 4280 | + | ebp | 100.0 | 98.0 | NP_646186 | (ebp) cell surface elastin binding protein [EbpS (VF0008)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00674 | 210 | 1579 | + | ebp | 93.6 | 95.0 | NP_646186 | (ebp) cell surface elastin binding protein [EbpS (VF0008)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00061 | 3291 | 6320 | - | esaA | 100.0 | 99.1 | NP_645074 | (esaA) type VII secretion system protein EsaA [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00061 | 2619 | 2861 | - | esaB | 100.0 | 100.0 | NP_645076 | (esaB) type VII secretion system protein EsaB [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00257 | 3198 | 3590 | + | esaC | 100.0 | 98.7 | NP_645081 | (esaC) type VII secretion system protein secreted protein EsxC [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00748 | 882 | 1274 | + | esaC | 100.0 | 98.0 | NP_645081 | (esaC) type VII secretion system protein secreted protein EsxC [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00061 | 2833 | 3291 | - | essA | 100.0 | 99.8 | NP_645075 | (essA) type VII secretion system protein EssA monotopic membrane protein [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00061 | 1272 | 2606 | - | essB | 100.0 | 99.9 | NP_645078 | (essB) type VII secretion system protein EssB monotopic membrane protein [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00061 | 6404 | 6697 | - | esxA | 100.0 | 100.0 | NP_645073 | (esxA) type VII secretion system protein secreted protein EsxA [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00257 | 3606 | 3920 | + | esxB | 100.0 | 99.4 | NP_645082 | (esxB) type VII secretion system protein secreted protein EsxB [Type VII secretion system (VF0403)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00037 | 3926 | 6982 | - | fnbA | 99.6 | 87.6 | NP_647238 | (fnbA) fibronectin-binding protein A [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00347 | 691 | 3410 | - | fnbA | 88.8 | 86.2 | NP_647238 | (fnbA) fibronectin-binding protein A [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00037 | 422 | 3244 | - | fnbB | 98.9 | 86.5 | NP_647237 | (fnbB) fibronectin-binding protein B [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00381 | 66 | 2891 | - | fnbB | 98.8 | 86.4 | NP_647237 | (fnbB) fibronectin-binding protein B [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00011 | 10976 | 13044 | + | geh | 99.8 | 99.5 | NP_645114 | (geh) glycerol ester hydrolase [Lipase (VF0012)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00209 | 75 | 2153 | + | geh | 100.0 | 94.1 | NP_645114 | (geh) glycerol ester hydrolase [Lipase (VF0012)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00013 | 3949 | 4772 | + | hlb | 83.0 | 100.0 | YP_186826 | (hlb) beta-hemolysin [<beta>-hemolysin (VF0002)] [Staphylococcus aureus subsp. aureus COL] |
| contig00013 | 22741 | 22875 | - | hld | 100.0 | 99.3 | NP_646776 | (hld) delta-hemolysin [<delta>-hemolysin (VF0007)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00018 | 19983 | 20912 | - | hlgA | 100.0 | 99.5 | NP_647159 | (hlgA) gamma-hemolysin chain II precursor [<gamma>-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00018 | 17489 | 18466 | - | hlgB | 100.0 | 99.9 | NP_647161 | (hlgB) gamma-hemolysin component B [<gamma>-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00119 | 788 | 1765 | + | hlgB | 100.0 | 94.7 | NP_647161 | (hlgB) gamma-hemolysin component B [<gamma>-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00018 | 18468 | 19415 | - | hlgC | 100.0 | 99.4 | NP_647160 | (hlgC) gamma-hemolysin component C [<gamma>-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00119 | 1 | 786 | + | hlgC | 82.9 | 84.1 | NP_647160 | (hlgC) gamma-hemolysin component C [<gamma>-hemolysin (VF0011)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00142 | 384 | 1343 | + | hly/hla | 100.0 | 99.5 | NP_645861 | (hly/hla) Alpha-Hemolysin precursor [<alpha>-hemolysin (VF0001)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00005 | 17217 | 19631 | - | hysA | 98.5 | 90.6 | NP_646946 | (hysA) hyaluronate lyase precursor [Hyaluronate lyase (VF0013)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00002 | 32159 | 33397 | - | icaA | 100.0 | 99.9 | NP_647403 | (icaA) N-acetylglucosaminyltransferase involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00002 | 31021 | 31893 | - | icaB | 100.0 | 100.0 | NP_647405 | (icaB) N-deacetylase involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00002 | 29982 | 31034 | - | icaC | 100.0 | 100.0 | NP_647406 | (icaC) intercellular adhesion protein C involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00352 | 2332 | 3327 | - | icaC | 94.6 | 95.2 | NP_647406 | (icaC) intercellular adhesion protein C involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00002 | 31890 | 32195 | - | icaD | 100.0 | 100.0 | NP_647404 | (icaD) intercellular adhesion protein D involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00002 | 33561 | 34121 | + | icaR | 100.0 | 100.0 | NP_647402 | (icaR) ica operon transcriptional regulator IcaR [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00713 | 387 | 947 | + | icaR | 100.0 | 98.8 | NP_647402 | (icaR) ica operon transcriptional regulator IcaR [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00025 | 19940 | 20992 | + | isdA | 100.0 | 100.0 | YP_001332075 | (isdA) iron-regulated surface determinant protein A [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00025 | 21195 | 23132 | + | isdB | 100.0 | 100.0 | YP_001332074 | (isdB) iron-regulated surface determinant protein B haemoglobin receptor [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00025 | 19048 | 19731 | - | isdC | 100.0 | 100.0 | YP_001332076 | (isdC) iron-regulated surface determinant protein C [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00025 | 17972 | 19048 | - | isdD | 100.0 | 99.7 | NP_645831 | (isdD) iron-regulated surface determinant protein D [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00025 | 17097 | 17975 | - | isdE | 100.0 | 100.0 | YP_001332078 | (isdE) iron-regulated surface determinant protein E [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00025 | 16119 | 17084 | - | isdF | 100.0 | 99.7 | NP_645833 | (isdF) iron-regulated surface determinant protein F ATP-binding-cassette-type transmembrane transporter [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00446 | 1511 | 2476 | - | isdF | 100.0 | 97.7 | NP_645833 | (isdF) iron-regulated surface determinant protein F ATP-binding-cassette-type transmembrane transporter [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00025 | 14981 | 15304 | - | isdG | 100.0 | 100.0 | YP_001332081 | (isdG) iron-regulated surface determinant protein G [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00446 | 373 | 696 | - | isdG | 100.0 | 99.1 | YP_001332081 | (isdG) iron-regulated surface determinant protein G [Isd (VF0015)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00002 | 27490 | 29535 | + | lip | 100.0 | 100.0 | NP_647407 | (lip) triacylglycerol lipase precursor [Lipase (CVF091)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00352 | 1 | 1997 | + | lip | 97.6 | 98.0 | NP_647407 | (lip) triacylglycerol lipase precursor [Lipase (CVF091)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00019 | 14095 | 15063 | - | lukF-PV | 99.0 | 82.0 | NP_646195 | (lukF-PV) Panton-Valentine leukocidin chain F precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00353 | 668 | 1645 | + | lukF-PV | 100.0 | 99.9 | NP_646195 | (lukF-PV) Panton-Valentine leukocidin chain F precursor [PVL (VF0018)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00010 | 7813 | 9567 | + | map | 100.0 | 99.6 | CAB94853 | (map) extracellular proteins Map [Eap/Map (VF0016)] [Staphylococcus aureus str. Newman D2C (ATCC 25904)] |
| contig00010 | 2998 | 3489 | + | sak | 100.0 | 99.2 | NP_646702 | (sak) Staphylokinase precursor [Staphylokinase (VF0021)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00018 | 21448 | 22758 | - | sbi | 99.8 | 97.7 | NP_647158 | (sbi) IgG-binding protein SBI [Sbi (VF0423)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00010 | 5702 | 6052 | + | scn | 100.0 | 100.0 | YP_001332910 | (scn) complement inhibitor SCIN [SCIN (VF0425)] [Staphylococcus aureus subsp. aureus str. Newman] |
| contig00012 | 14918 | 17591 | - | sdrC | 93.2 | 95.0 | NP_645333 | (sdrC) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00012 | 10206 | 14261 | - | sdrD | 99.8 | 96.9 | NP_645334 | (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00360 | 1 | 3267 | + | sdrD | 80.8 | 97.9 | NP_645334 | (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00012 | 6306 | 9812 | - | sdrE | 100.0 | 95.7 | NP_645335 | (sdrE) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00137 | 730 | 4185 | + | sdrE | 100.0 | 91.6 | NP_645335 | (sdrE) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00006 | 39304 | 40782 | - | spa | 100.0 | 97.6 | NP_644899 | (spa) Immunoglobulin G binding protein A precursor [SpA (VF0017)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00025 | 15323 | 16057 | - | srtB | 100.0 | 99.6 | NP_645834 | (srtB) NPQTN specific sortase B [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00446 | 715 | 1449 | - | srtB | 100.0 | 98.0 | NP_645834 | (srtB) NPQTN specific sortase B [Isd (VF0015)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00157 | 2808 | 3818 | - | sspA | 100.0 | 96.4 | NP_645749 | (sspA) serine protease; V8 protease; glutamyl endopeptidase [V8 protease (VF0023)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00342 | 100 | 1083 | + | sspA | 100.0 | 95.2 | NP_645749 | (sspA) serine protease; V8 protease; glutamyl endopeptidase [V8 protease (VF0023)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00157 | 1545 | 2726 | - | sspB | 100.0 | 99.1 | NP_645748 | (sspB) staphopain cysteine proteinase SspB [Staphopain (VF0006)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00342 | 1165 | 2346 | + | sspB | 100.0 | 98.4 | NP_645748 | (sspB) staphopain cysteine proteinase SspB [Staphopain (VF0006)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00157 | 1178 | 1507 | - | sspC | 100.0 | 99.7 | NP_645747 | (sspC) Staphostatin B [Staphopain (VF0006)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00342 | 2384 | 2713 | + | sspC | 100.0 | 98.5 | NP_645747 | (sspC) Staphostatin B [Staphopain (VF0006)] [Staphylococcus aureus subsp. aureus MW2] |
| contig00009 | 3968 | 5494 | - | vWbp | 100.0 | 100.0 | YP_001331791 | (vWbp) secreted von Willebrand factor-binding protein precursor [vWbp (VF0420)] [Staphylococcus aureus subsp. aureus str. Newman] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00070 | 4717 | 5550 | + | csgG | 99.9 | 81.7 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00129 | 1463 | 2202 | + | entA | 98.5 | 80.4 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00013 | 45069 | 46114 | + | ompA | 99.0 | 83.6 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| ID001 | ecloacae | 125 | dnaA(63) | fusA(3) | gyrB(66) | leuS(68) | pyrG(3) | rplB(16) | rpoB(3) |
| ID013II | ecloacae | - | dnaA(~315) | fusA(~51) | gyrB(65) | leuS(86) | pyrG(~153) | rplB(~22) | rpoB(1) |
| ID038 | ecloacae | 190 | dnaA(9) | fusA(4) | gyrB(15) | leuS(6) | pyrG(37) | rplB(4) | rpoB(9) |
| ID086 | ecoli | 131 | adk(53) | fumC(40) | gyrB(47) | icd(13) | mdh(36) | purA(28) | recA(29) |
| ID086II | ecloacae | 144 | dnaA(74) | fusA(20) | gyrB(74) | leuS(78) | pyrG(45) | rplB(35) | rpoB(32) |
| ID267 | abaumannii_2 | 1 | Pas_cpn60(1) | Pas_fusA(1) | Pas_gltA(1) | Pas_pyrG(1) | Pas_recA(5) | Pas_rplB(1) | Pas_rpoB(1) |
| ORTHO006E | - | - | |||||||
| ORTHO008E | ecoli | 1722 | adk(101) | fumC(4) | gyrB(97) | icd(29) | mdh(70) | purA(158) | recA(2) |
| ORTHO014EII | ecloacae | 102 | dnaA(59) | fusA(9) | gyrB(12) | leuS(9) | pyrG(67) | rplB(6) | rpoB(25) |
| ORTHO025E | ecloacae | - | dnaA(289) | fusA(~85) | gyrB(~218) | leuS(~229) | pyrG(~283) | rplB(61) | rpoB(129) |
| ORTHO025EII | saureus | - | arcC(3,46) | aroE(3,75) | glpF(1,49) | gmk(1,44) | pta(4) | tpi(4,68) | yqiL(3,60) |
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 0 |
| Soft core genes | (95% <= strains < 99%) | 0 |
| Shell genes | (15% <= strains < 95%) | 9487 |
| Cloud genes | (0% <= strains < 15%) | 17813 |
| Total genes | (0% <= strains <= 100%) | 27300 |
| Field | Description |
|---|---|
| Region | Numeric code given to insertion sequence (IS) |
| Orientation | The orientation of IS position: Either forward (F) or reverse (F) |
| X-cordinates | The left coordinate of the position |
| Y-coordinates | The right coordinate of the position |
| Gap | The distance between the x and y coordinates |
| CallType | Describes whether a position hit is novel (not in reference) or known (in the reference) |
| LeftGene | Locus tag ID of the gene closest to the left side of the IS position |
| LeftGeneDescription | Description of the gene feature from the left side of the IS position. By default this is the product position |
| RightGene | Locus tag ID of the gene closest to the right side of the IS position |
| RightGeneDescription | Description of the gene feature from the right side of the IS position. By default this is the product position |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 1249701 | 1249710 | -9 | novel | MS7884_1190 | arginine deiminase | MS7884_1190 | arginine deiminase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 3915709 | 3915718 | -9 | novel | MS7884_3704 | RhsB | MS7884_3704 | RhsB |
| region_2 | R | 4462440 | 4462449 | -9 | novel | MS7884_4211 | hypothetical protein | MS7884_4212 | anaerobic dimethyl sulfoxide reductase subunit A |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | -1 | 2663195 | 2663196 | novel | MS7884_4565 | beta-ketoacyl-[acyl-carrier-protein] synthase II | MS7884_2525 | poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA |
If you have used rMAP, please cite:
Sserwadda, I., & Mboowa, G. (2021). rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. Microbial genomics, 7(6), 10.1099/mgen.0.000583. https://doi.org/10.1099/mgen.0.000583
The philosophy of rMAP was built on the foundation of already pre-existing tools. As a token of gratitude to the authors of those numerous tools, please also cite: